New Phytologist - 192 (1-4), 2011

New Phytologist - 192 (1), 2011




Contents:

Danger at your door: pathogen signals and programmed cell death in plants
Ma, Yi; Berkowitz, Gerald A.

Timescales and timetrees
Kenrick, Paul

One hundred important questions facing plant science research
Grierson, C. S.; Barnes, S. R.; Chase, M. W.; Clarke, M.; Grierson, D.; Edwards, K. J.; Jellis, G. J.; Jones, J. D.; Knapp, S.; Oldroyd, G.; Poppy, G.; Temple, P.; Williams, R.; Bastow, R.

Cell-cell communication and signalling pathways within the ovule: from its inception to fertilization
Chevalier, Éric; Loubert-Hudon, Audrey; Zimmerman, Erin L.; Matton, Daniel P.

A critical framework for the assessment of biological palaeoproxies: predicting past climate and levels of atmospheric CO2 from fossil leaves
ordan, Gregory J.

Calcium-regulated anion channels in the plasma membrane of Lilium longiflorum pollen protoplasts
Tavares, Bárbara; Dias, Pedro Nuno; Domingos, Patrícia; Moura, Teresa Fonseca; Feijó, José Alberto; Bicho, Ana

The Arabidopsis Ca2+ - dependent protein kinase CPK12 negatively regulates abscisic acid signaling in seed germination and post-germination growth
Zhao, Rui; Sun, Hai-Li; Mei, Chao; Wang, Xiao-Jing; Yan, Lu; Liu, Rui; Zhang, Xiao-Feng; Wang, Xiao-Fang; Zhang, Da-Peng

The thylakoid protease Deg2 is involved in stress-related degradation of the photosystem II light-harvesting protein Lhcb6 in Arabidopsis
Luciński, Robert; Misztal, Lucyna; Samardakiewicz, Sławomir; Jackowski, Grzegorz

Phloem transport of arsenic species from flag leaf to grain during grain filling
Carey, Anne-Marie; Norton, Gareth J.; Deacon, Claire; Scheckel, Kirk G.; Lombi, Enzo; Punshon, Tracy; Guerinot, Mary Lou; Lanzirotti, Antonio; Newville, Matt; Choi, Yongseong; Price, Adam H.; Meharg, Andrew A.

Physiological and molecular analysis of polyethylene glycol-induced reduction of aluminium accumulation in the root tips of common bean (Phaseolus vulgaris)
Yang, Zhong-Bao; Eticha, Dejene; Rotter, Björn; Rao, Idupulapati Madhusudana; Horst, Walter Johannes

Identification of pectin methylesterase 3 as a basic pectin methylesterase isoform involved in adventitious rooting in Arabidopsis
Guénin, Stéphanie; Mareck, Alain; Rayon, Catherine; Lamour, Romain; Assoumou Ndong, Yves; Domon, Jean-Marc; Sénéchal, Fabien; Fournet, Françoise; Jamet, Elisabeth; Canut, Hervé; Percoco, Giuseppe; Mouille, Grégory; Rolland, Aurélia; Rustérucci, Christine; Guerineau, François; Van Wuytswinkel, Olivier; Gillet, Françoise; Driouich, Azeddine; Lerouge, Patrice; Gutierrez, Laurent; Pelloux, Jérôme

Type-2 histone deacetylases as new regulators of elicitor-induced cell death in plants
Bourque, Stéphane; Dutartre, Agnes; Hammoudi, Valentin; Blanc, Sabrina; Dahan, Jennifer; Jeandroz, Sylvain; Pichereaux, Carole; Rossignol, Michel; Wendehenne, David

Plant defensin AhPDF1.1 is not secreted in leaves but it accumulates in intracellular compartments
Oomen, Ronald J. F. J.; Séveno-Carpentier, Emilie; Ricodeau, Nicolas; Bournaud, Caroline; Conéjéro, Genevieve; Paris, Nadine; Berthomieu, Pierre; Marques, Laurence

Qualitative and quantitative resistances to leaf rust finely mapped within two nucleotide-binding site leucine-rich repeat (NBS-LRR)-rich genomic regions of chromosome 19 in popular
Bresson, Alois; Jorge, Véronique; Dowkiw, Arnaud; Guerin, Vanina; Bourgait, Isabelle; Tuskan, Gerald A.; Schmutz, Jeremy; Chalhoub, Boulos; Bastien, Catherine; Faivre Rampant, Patricia

Comparative analysis of peanut NBS-LRR gene clusters suggests evolutionary innovation among duplicated domains and erosion of gene microsynteny
Ratnaparkhe, Milind B.; Wang, Xiyin; Li, Jingping; Compton, Rosana O.; Rainville, Lisa K.; Lemke, Cornelia; Kim, Changsoo; Tang, Haibao; Paterson, Andrew H.

Invasion potential and host shifts of Australian and African ectomycorrhizal fungi in mixed eucalypt plantations
Jairus, Teele; Mpumba, Rebecca; Chinoya, Stephen; Tedersoo, Leho

The role of heterotrophic carbon acquisition by the hemiparasitic plant Rhinanthus alectorolophus in seedling establishment in natural communities: a physiological perspective
Těšitel, Jakub; Lepš, Jan; Vráblová, Martina; Cameron, Duncan D.

Seven years of carbon dioxide enrichment, nitrogen fertilization and plant diversity influence arbuscular mycorrhizal fungi in a grassland ecosystem
Antoninka, Anita; Reich, Peter B.; Johnson, Nancy Collins

Evolutionary ecology of plant-microbe interactions: soil microbial structure alters selection on plant traits
Lau, Jennifer A.; Lennon, Jay T.

Evolution of sexual systems, dispersal strategies and habitat selection in the liverwort genus Radula
Devos, Nicolas; Renner, Matt A. M.; Gradstein, Robbert; Shaw, A. Jonathan; Laenen, Benjamin; Vanderpoorten, Alain

Adaptive genetic differentiation in a predominantly self-pollinating species analyzed by transplanting into natural environment, crossbreeding and QST–FST test
Volis, S.

Selective seed abortion induced by nectar robbing in the selfing plant Comastoma pulmonarium
Zhang, Chan; Irwin, Rebecca E.; Wang, Yun; He, Ya-Ping; Yang, Yong-Ping; Duan, Yuan-Wen

Phenotypic consequences of polyploidy and genome size at the microevolutionary scale: a multivariate morphological approach
Balao, Francisco; Herrera, Javier; Talavera, Salvador

Establishing a time-scale for plant evolution
Clarke, John T.; Warnock, Rachel C. M.; Donoghue, Philip C. J.

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New Phytologist - 192 (2), 2011




Contents:

Theory in plant science
Ian Woodward, F.

Moving copper in plants
Pilon, Marinus

Ferns: a xylem success story
McElwain, Jennifer C.

Past UV-B flux from fossil pollen: prospects for climate, environment and evolution
Magri, Donatella

Bioenergy from trees
Herr, Joshua R.

Fire regimes: moving from a fuzzy concept to geographic entity
Murphy, Brett P.; Williamson, Grant J.; Bowman, David M. J. S.

Auxin promotes the transition from chloronema to caulonema in moss protonema by positively regulating PpRSL1and PpRSL2 in Physcomitrella patens
Jang, Geupil; Dolan, Liam

Homeostasis of plasma membrane viscosity in fluctuating temperatures
Martiniere, Alexandre; Shvedunova, Maria; Thomson, Adrian J.W.; Evans, Nicola H.; Penfield, Steven; Runions, John; McWatters, Harriet G.

Transcriptome analysis reveals coordinated spatiotemporal regulation of hemoglobin and nitrate reductase in response to nitrate in maize roots
Trevisan, S.; Manoli, A.; Begheldo, M.; Nonis, A.; Enna, M.; Vaccaro, S.; Caporale, G.; Ruperti, B.; Quaggiotti, S.

The Pisum sativum psp54 gene requires ABI3 and a chromatin remodeller to switch from a poised to a transcriptionally active state
Gagete, Andrés P.; Franco, Luis; Isabel Rodrigo, M.

Application of a high-speed breeding technology to apple (Malus × domestica) based on transgenic early flowering plants and marker-assisted selection
Flachowsky, Henryk; Le Roux, Pierre-Marie; Peil, Andreas; Patocchi, Andrea; Richter, Klaus; Hanke, Magda-Viola

Deciphering the genetic determinism of bud phenology in apple progenies: a new insight into chilling and heat requirement effects on flowering dates and positional candidate genes
Celton, J-M.; Martinez, S.; Jammes, M-J.; Bechti, A.; Salvi, S.; Legave, J-M.; Costes, E.

The tonoplast copper transporter COPT5 acts as an exporter and is required for interorgan allocation of copper in Arabidopsis thaliana
Klaumann, Sandra; Nickolaus, Sebastian D.; Fürst, Sarah H.; Starck, Sabrina; Schneider, Sabine; Ekkehard Neuhaus, H.; Trentmann, Oliver

Engineering plants for the phytoremediation of RDX in the presence of the co-contaminating explosive TNT
Rylott, Elizabeth L.; Budarina, Maria V.; Barker, Ann; Lorenz, Astrid; Strand, Stuart E.; Bruce, Neil C.

Evaluation of an electrostatic toxicity model for predicting Ni2+ toxicity to barley root elongation in hydroponic cultures and in soils
Wang, Peng; Kopittke, Peter M.; De Schamphelaere, Karel A. C.; Zhao, Fang-Jie; Zhou, Dong-Mei; Lock, Koen; Ma, Yi-Bing; Peijnenburg, Willie J. G. M.; McGrath, Steve P.

Low magnesium status in plants enhances tolerance to cadmium exposure
Hermans, Christian; Chen, Jiugeng; Coppens, Frederik; Inzé, Dirk; Verbruggen, Nathalie

Water supply and demand remain balanced during leaf acclimation of Nothofagus cunninghamii trees
Brodribb, Timothy J.; Jordan, Gregory J.

Structure-function constraints of tracheid-based xylem: a comparison of conifers and ferns
Pittermann, Jarmila; Limm, Emily; Rico, Christopher; Christman, Mairgareth A.

Are vascular epiphytes nitrogen or phosphorus limited? A study of plant 15N fractionation and foliar N : P stoichiometry with the tank bromeliad Vriesea sanguinolenta
Wanek, Wolfgang; Zotz, Gerhard

ADS1 encodes a MATE-transporter that negatively regulates plant disease resistance
Sun, Xinli; Gilroy, Eleanor M.; Chini, Andrea; Nurmberg, Pedro L.; Hein, Ingo; Lacomme, Christophe; Birch, Paul R. J.; Hussain, Adil; Yun, Byung-Wook; Loake, Gary J.

BcSpl1, a cerato-platanin family protein, contributes to Botrytis cinerea virulence and elicits the hypersensitive response in the host
Frías, Marcos; González, Celedonio; Brito, Nélida

Crucial role of (homo)glutathione in nitrogen fixation in Medicago truncatula nodules
El Msehli, Sarra; Lambert, Annie; Baldacci-Cresp, Fabien; Hopkins, Julie; Boncompagni, Eric; Smiti, Samira Aschi; Hérouart, Didier; Frendo, Pierre

Composition and diversity of nifH genes of nitrogen-fixing cyanobacteria associated with boreal forest feather mosses
Ininbergs, Karolina; Bay, Guillaume; Rasmussen, Ulla; Wardle, David A.; Nilsson, Marie-Charlotte

Analysis of network architecture reveals phylogenetic constraints on mycorrhizal specificity in the genus Orchis (Orchidaceae)
Jacquemyn, Hans; Merckx, Vincent; Brys, Rein; Tyteca, Daniel; Cammue, Bruno P. A.; Honnay, Olivier; Lievens, Bart

Differentiation of reproductive and competitive ability in the invaded range of Senecio inaequidens: the role of genetic Allee effects, adaptive and nonadaptive evolution
Lachmuth, Susanne; Durka, Walter; Schurr, Frank M.

Environment-dependent intralocus sexual conflict in a dioecious plant
Delph, Lynda F.; Andicoechea, Jonathan; Steven, Janet C.; Herlihy, Christopher R.; Scarpino, Samuel V.; Bell, Daniela L.

Quantification of UV-B flux through time using UV-B-absorbing compounds contained in fossil Pinus sporopollenin
Willis, K. J.; Feurdean, A.; Birks, H. J. B.; Bjune, A. E.; Breman, E.; Broekman, R.; Grytnes, J-A.; New, M.; Singarayer, J. S.; Rozema, J.

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New Phytologist - 192 (3), 2011




Contents:

Celebrating the ecosystem's three-quarter century: Introduction to a Virtual Special Issue on Sir Arthur Tansley’s ecosystem concept
Austin, Amy

Conserved chromatin structural proteins - a source of variation enabling plant-specific adaptations?
Jerzmanowski, Andrzej; Kotlinski, Maciej

Chemical diversity on display in the plant innate immune systems of closely-related species
Clay, Nicole K.

Changes to publication requirements made at the XVIII International Botanical Congress in Melbourne - what does e-publication mean for you?
Knapp, Sandra; McNeill, John; Turland, Nicholas J.

Measuring and modeling roots, the rhizosphere, and microbial processes belowground
Luke McCormack, M.; Fernandez, Christopher W.

The plant-specific family of DNA-binding proteins containing three HMG-box domains interacts with mitotic and meiotic chromosomes
Pedersen, Dorthe S.; Coppens, Frederik; Ma, Lu; Antosch, Martin; Marktl, Barbara; Merkle, Thomas; Beemster, Gerrit T. S.; Houben, Andreas; Grasser, Klaus D.

Characterization of an ethylene-inducible, calcium-dependent nuclease that is differentially expressed in cucumber flower development
Gu, Hai-Tao; Wang, Dong-Hui; Li, Xia; He, Chao-Xing; Xu, Zhi-Hong; Bai, Shu-Nong

Root hair development involves asymmetric cell division in Brachypodium distachyon and symmetric division in Oryza sativa
Kim, Chul Min; Dolan, Liam

Silencing of 4-coumarate:coenzyme A ligase in switchgrass leads to reduced lignin content and improved fermentable sugar yields for biofuel production
Xu, Bin; Escamilla-Trevino, Luis L.; Sathitsuksanoh, Noppadon; Shen, Zhengxing; Shen, Hui; Percival Zhang, Y-H.; Dixon, Richard A.; Zhao, Bingyu

Tissue-specific expression of Populus C19 GA 2-oxidases differentially regulate above- and below-ground biomass growth through control of bioactive GA concentrations
Gou, Jiqing; Ma, Cathleen; Kadmiel, Mahita; Gai, Ying; Strauss, Steven; Jiang, Xiangning; Busov, Victor

Effects of stomatal delays on the economics of leaf gas exchange under intermittent light regimes
Vico, Giulia; Manzoni, Stefano; Palmroth, Sari; Katul, Gabriel

Three-dimensional visualization and quantification of water content in the rhizosphere
Moradi, Ahmad B.; Carminati, Andrea; Vetterlein, Doris; Vontobel, Peter; Lehmann, Eberhard; Weller, Ulrich; Hopmans, Jan W.; Vogel, Hans-Jörg; Oswald, Sascha E.

Root hydraulic conductance and aquaporin abundance respond rapidly to partial root-zone drying events in a riparian Melaleuca species
McLean, Elizabeth H.; Ludwig, Martha; Grierson, Pauline F.

A dual porosity model of nutrient uptake by root hairs
Zygalakis, K. C.; Kirk, G. J. D.; Jones, D. L.; Wissuwa, M.; Roose, T.

Below-ground carbon transfer among Betula nana may increase with warming in Arctic tundra
Deslippe, Julie R.; Simard, Suzanne W.

Ectomycorrhizal fungal diversity and community structure on three co-occurring leguminous canopy tree species in a Neotropical rainforest
Smith, Matthew E.; Henkel, Terry W.; Catherine Aime, M.; Fremier, Alex K.; Vilgalys, Rytas

Conservation and clade-specific diversification of pathogen-inducible tryptophan and indole glucosinolate metabolism in Arabidopsis thaliana relatives
Bednarek, Paweł; Piślewska-Bednarek, Mariola; Ver Loren van Themaat, Emiel; Maddula, Ravi Kumar; Svatoš, Aleš; Schulze-Lefert, Paul

Selenium accumulation in flowers and its effects on pollination
Quinn, Colin F.; Prins, Christine N.; Freeman, John L.; Gross, Amanda M.; Hantzis, Laura J.; Reynolds, Ray J. B.; in Yang, Soo; Covey, Paul A.; Banuelos, Gary S.; Pickering, Ingrid J.; Fakra, Sirine C.; Marcus, Matthew A.; Arathi, H. S.; Pilon-Smits, Elizabeth A. H.

Heterospecific pollen deposition: does diversity alter the consequences?
Arceo-Gómez, Gerardo; Ashman, Tia-Lynn

Analysis of two abundant, highly related satellites in the allotetraploid Nicotiana arentsii using double-strand conformation polymorphism analysis and sequencing
Matyasek, Roman; Fulnecek, Jaroslav; Leitch, Andrew R.; Kovarik, Ales

Genomic expression dominance in the natural allopolyploid Coffea arabica is massively affected by growth temperature
Bardil, Amélie; de Almeida, Juliana Dantas; Combes, Marie Christine; Lashermes, Philippe; Bertrand, Benoît

Are similarity- or phylogeny-based methods more appropriate for classifying internal transcribed spacer (ITS) metagenomic amplicons?
Porter, Teresita M.; Brian Golding, G.

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New Phytologist - 192 (4), 2011




Contents:

Goes online-only from January 2012
Alexander, Ian J.; Slater, Holly

Introduction to a Virtual Special Issue on calcium signalling in plants
Brownlee, Colin; Hetherington, Alistair

Wetlands and the global carbon cycle: what might the simulated past tell us about the future?
Keller, Jason K.

Delivering resistance to a major constraint for rain-fed rice production
Pickett, John A.; Hooper, Antony M.

Estimation of the Glomus intraradices nuclear DNA content
Sędzielewska, Kinga A.; Fuchs, Jörg; Temsch, Eva M.; Baronian, Keith; Watzke, Roland; Kunze, Gotthard

Multi-factor global change experiments: what have we learned about terrestrial carbon storage and exchange?
Templer, Pamela H.; Reinmann, Andrew B.

Mechanistic causes of tree drought mortality: recent results, unresolved questions and future research needs
Zeppel, Melanie J. B.; Adams, Henry D.; Anderegg, William R. L.

Repairing breaks in the plant genome: the importance of keeping it together
Waterworth, Wanda M.; Drury, Georgina E.; Bray, Clifford M.; West, Christopher E.

The cellular language of myo-inositol signaling
Gillaspy, Glenda E.

Disruption of the ceramide synthase LOH1 causes spontaneous cell death in Arabidopsis thaliana
Ternes, Philipp; Feussner, Kirstin; Werner, Stephanie; Lerche, Jennifer; Iven, Tim; Heilmann, Ingo; Riezman, Howard; Feussner, Ivo

PpASCL, a moss ortholog of anther-specific chalcone synthase-like enzymes, is a hydroxyalkylpyrone synthase involved in an evolutionarily conserved sporopollenin biosynthesis pathway
Colpitts, Che C.; Kim, Sung Soo; Posehn, Sarah E.; Jepson, Christina; Kim, Sun Young; Wiedemann, Gertrud; Reski, Ralf; Wee, Andrew G. H.; Douglas, Carl J.; Suh, Dae-Yeon

Molecular features of secondary vascular tissue regeneration after bark girdling in Populus
Zhang, Jing; Gao, Ge; Chen, Jia-Jia; Taylor, Gail; Cui, Ke-Ming; He, Xin-Qiang

Heterogeneous distribution of pectin epitopes and calcium in different pit types of four angiosperm species
Plavcová, Lenka; Hacke, Uwe G.

Contrasting wetland CH4 emission responses to simulated glacial atmospheric CO2 in temperate bogs and fens
Boardman, Carl P.; Gauci, Vincent; Watson, Jonathan S.; Blake, Stephen; Beerling, David J.

Examining the large-scale convergence of photosynthesis-weighted tree leaf temperatures through stable oxygen isotope analysis of multiple data sets
Song, Xin; Barbour, Margaret M.; Saurer, Matthias; Helliker, Brent R.

The diel imprint of leaf metabolism on the ?13C signal of soil respiration under control and drought conditions
Barthel, Matthias; Hammerle, Albin; Sturm, Patrick; Baur, Thomas; Gentsch, Lydia; Knohl, Alexander

Seasonal fluctuations in Vitis vinifera root respiration in the field
Franck, Nicolás; Morales, Joaquín P.; Arancibia-Avendano, David; García de Cortázar, Víctor; Perez-Quezada, Jorge F.; Zurita-Silva, Andrés; Pastenes, Claudio

New Rice for Africa (NERICA) cultivars exhibit different levels of post-attachment resistance against the parasitic weeds Striga hermonthica and Striga asiatica
Cissoko, Mamadou; Boisnard, Arnaud; Rodenburg, Jonne; Press, Malcolm C.; Scholes, Julie D.

Pre-attachment Striga hermonthica resistance of New Rice for Africa (NERICA) cultivars based on low strigolactone production
Jamil, Muhammad; Rodenburg, Jonne; Charnikhova, Tatsiana; Bouwmeester, Harro J.

Functional diversification of the GALA type III effector family contributes to Ralstonia solanacearum adaptation on different plant hosts
Remigi, Philippe; Anisimova, Maria; Guidot, Alice; Genin, Stéphane; Peeters, Nemo

Ectomycorrhizas from a Lower Eocene angiosperm forest
Beimforde, Christina; Schäfer, Nadine; Dörfelt, Heinrich; Nascimbene, Paul C.; Singh, Hukam; Heinrichs, Jochen; Reitner, Joachim; Rana, Rajendra S.; Schmidt, Alexander R.

Cenozoic extinctions account for the low diversity of extant gymnosperms compared with angiosperms
Crisp, Michael D.; Cook, Lyn G.

Pyrrolizidine alkaloid variation in shoots and roots of segregating hybrids between Jacobaea vulgaris and Jacobaea aquatica
Cheng, Dandan; Kirk, Heather; Mulder, Patrick P. J.; Vrieling, Klaas; Klinkhamer, Peter G. L.

Direction and extent of organelle DNA introgression between two spruce species in the Qinghai-Tibetan Plateau
Du, Fang K.; Peng, Xiao Li; Liu, Jian Quan; Lascoux, Martin; Hu, Feng Sheng; Petit, Rémy J.

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