The Plant Journal - 67 (1), 2011

Contents:


Cryptochrome 1 and phytochrome B control shade-avoidance responses in Arabidopsis via partially independent hormonal cascades
Keller, Mercedes M.; Jaillais, Yvon; Pedmale, Ullas V.; Moreno, Javier E.; Chory, Joanne; Ballaré, Carlos L.

Blue-light-mediated shade avoidance requires combined auxin and brassinosteroid action in Arabidopsis seedlings
Keuskamp, Diederik H.; Sasidharan, Rashmi; Vos, Irene; Peeters, Anton J. M.; Voesenek, Laurentius A. C. J.; Pierik, Ronald

The microRNA miR393 re-directs secondary metabolite biosynthesis away from camalexin and towards glucosinolates
Robert-Seilaniantz, Alexandre; MacLean, Dan; Jikumaru, Yusuke; Hill, Lionel; Yamaguchi, Shinjiro; Kamiya, Yuji; Jones, Jonathan D. G.

Profiling of short RNAs during fleshy fruit development reveals stage-specific sRNAome expression patterns
Mohorianu, Irina; Schwach, Frank; Jing, Runchun; Lopez-Gomollon, Sara; Moxon, Simon; Szittya, Gyorgy; Sorefan, Karim; Moulton, Vincent; Dalmay, Tamas

Malate transport by the vacuolar AtALMT6 channel in guard cells is subject to multiple regulation
Meyer, Stefan; Scholz-Starke, Joachim; De Angeli, Alexis; Kovermann, Peter; Burla, Bo; Gambale, Franco; Martinoia, Enrico

Arabidopsis MAP Kinase Phosphatase 1 (AtMKP1) negatively regulates MPK6-mediated PAMP responses and resistance against bacteria
Anderson, Jeffrey C.; Bartels, Sebastian; Besteiro, Marina A. González; Shahollari, Bationa; Ulm, Roman; Peck, Scott C.

ICE1 Ser403 is necessary for protein stabilization and regulation of cold signaling and tolerance
Miura, Kenji; Ohta, Masaru; Nakazawa, Machiko; Ono, Michiyuki; Hasegawa, Paul M.

Members of the RKD transcription factor family induce an egg cell-like gene expression program
Kőszegi, Dávid; Johnston, Amal J.; Rutten, Twan; Czihal, Andreas; Altschmied, Lothar; Kumlehn, Jochen; Wüst, Samuel E. J.; Kirioukhova, Olga; Gheyselinck, Jacqueline; Grossniklaus, Ueli; Bäumlein, Helmut

Deep sequencing of small RNAs specifically associated with Arabidopsis AGO1 and AGO4 uncovers new AGO functions
Wang, Huan; Zhang, Xiuren; Liu, Jun; Kiba, Takatoshi; Woo, Jongchan; Ojo, Tolulope; Hafner, Markus; Tuschl, Thomas; Chua, Nam-Hai; Wang, Xiu-Jie

Micro-collinearity and genome evolution in the vicinity of an ethylene receptor gene of cultivated diploid and allotetraploid coffee species (
Yu, Qingyi; Guyot, Romain; de Kochko, Alexandre; Byers, Anne; Navajas-Pérez, Rafael; Langston, Brennick J.; Dubreuil-Tranchant, Christine; Paterson, Andrew H.; Poncet, Valérie; Nagai, Chifumi; Ming, Ray

PROTON GRADIENT REGULATION 3 recognizes multiple targets with limited similarity and mediates translation and RNA stabilization in plastids
Cai, Wenhe; Okuda, Kenji; Peng, Lianwei; Shikanai, Toshiharu

OVATE FAMILY PROTEIN4 (OFP4) interaction with KNAT7 regulates secondary cell wall formation in
Li, Eryang; Wang, Shucai; Liu, Yuanyuan; Chen, Jin-Gui; Douglas, Carl J.

Two Arabidopsis cytochrome P450 monooxygenases, CYP714A1 and CYP714A2, function redundantly in plant development through gibberellin deactivation
Zhang, Yingying; Zhang, Baichen; Yan, Dawei; Dong, Weixin; Yang, Weibing; Li, Qun; Zeng, Longjun; Wang, Jianjun; Wang, Linyou; Hicks, Leslie M.; He, Zuhua

Metabolomics reveals comprehensive reprogramming involving two independent metabolic responses of Arabidopsis to UV-B light
Kusano, Miyako; Tohge, Takayuki; Fukushima, Atsushi; Kobayashi, Makoto; Hayashi, Naomi; Otsuki, Hitomi; Kondou, Youichi; Goto, Hiroto; Kawashima, Mika; Matsuda, Fumio; Niida, Rie; Matsui, Minami; Saito, Kazuki; Fernie, Alisdair R.

Assigning DYW-type PPR proteins to RNA editing sites in the funariid mosses
Rüdinger, Mareike; Szövényi, Péter; Rensing, Stefan A.; Knoop, Volker

The Plant Journal - 66 (6), 2011

Contents:

Cortical microtubules optimize cell-wall crystallinity to drive unidirectional growth in Arabidopsis
Fujita, Miki; Himmelspach, Regina; Hocart, Charles H.; Williamson, Richard E.; Mansfield, Shawn D.; Wasteneys, Geoffrey O.

A T-DNA mutation in the RNA helicase eIF4A confers a dose-dependent dwarfing phenotype in Brachypodium distachyon
Vain, Philippe; Thole, Vera; Worland, Barbara; Opanowicz, Magdalena; Bush, Max S.; Doonan, John H.

Targeted manipulation of leaf form via local growth repression
Malinowski, Robert; Kasprzewska, Ania; Fleming, Andrew J.

A critical role of autophagy in plant resistance to necrotrophic fungal pathogens
Lai, Zhibing; Wang, Fei; Zheng, Zuyu; Fan, Baofang; Chen, Zhixiang

Arabidopsis metacaspase?2d is a positive mediator of cell death induced during biotic and abiotic stresses
Watanabe, Naohide; Lam, Eric

AtHsp70-15-deficient Arabidopsis plants are characterized by reduced growth, a constitutive cytosolic protein response and enhanced resistance to TuMV
Jungkunz, Isabel; Link, Katrin; Vogel, Florian; Voll, Lars M.; Sonnewald, Sophia; Sonnewald, Uwe

Semi-dominant mutations in the CC-NB-LRR-type R gene, NLS1, lead to constitutive activation of defense responses in rice
Tang, Jiuyou; Zhu, Xudong; Wang, Yiqin; Liu, Linchuan; Xu, Bo; Li, Feng; Fang, Jun; Chu, Chengcai

Conserved differential expression of paralogous DEFICIENS- and GLOBOSA-like MADS-box genes in the flowers of Orchidaceae: refining the `orchid code'
Mondragón-Palomino, Mariana; Theißen, Günter

Overlapping and antagonistic activities of BASIC PENTACYSTEINE genes affect a range of developmental processes in Arabidopsis
Monfared, Mona M.; Simon, Marissa K.; Meister, Robert J.; Roig-Villanova, Irma; Kooiker, Maarten; Colombo, Lucia; Fletcher, Jennifer C.; Gasser, Charles S.

The evolutionary history of Antirrhinum suggests that ancestral phenotype combinations survived repeated hybridizations
Wilson, Yvette; Hudson, Andrew

Proteasome-mediated turnover of the transcriptional activator FIT is required for plant iron-deficiency responses
Sivitz, Alicia; Grinvalds, Claudia; Barberon, Marie; Curie, Catherine; Vert, Grégory

APETALA2/ETHYLENE RESPONSE FACTOR and basic helix-loop-helix tobacco transcription factors cooperatively mediate jasmonate-elicited nicotine biosynthesis
De Boer, Kathleen; Tilleman, Sofie; Pauwels, Laurens; Vanden Bossche, Robin; De Sutter, Valerie; Vanderhaeghen, Rudy; Hilson, Pierre; Hamill, John D.; Goossens, Alain

CUP-SHAPED COTYLEDON1 transcription factor activates the expression of LSH4 and LSH3, two members of the ALOG gene family, in shoot organ boundary cells
Takeda, Seiji; Hanano, Keiko; Kariya, Ayano; Shimizu, Satoko; Zhao, Li; Matsui, Minami; Tasaka, Masao; Aida, Mitsuhiro

Farnesol kinase is involved in farnesol metabolism, ABA signaling and flower development in Arabidopsis
Fitzpatrick, A. Heather; Bhandari, Jayaram; Crowell, Dring N.

In planta quantification of endoreduplication using fluorescent in situ hybridization (FISH)
Bourdon, Matthieu; Coriton, Olivier; Pirrello, Julien; Cheniclet, Catherine; Brown, Spencer C.; Poujol, Christel; Chevalier, Christian; Renaudin, Jean-Pierre; Frangne, Nathalie

Molecular Biology and Evolution - 27 (6), VI 2010

(Volume 27, Issue 6, June 2010)

SPIS TREŚCI:

LETTER

Maternal – Fetal Conflict: Rapidly Evolving Proteins in the Rodent Placenta
Edward B. Chuong, Wenfei Tong, and Hopi E. Hoekstra

RESEARCH ARTICLES

On the Utility of Short Intron Sequences as a Reference for the Detection of Positive and Negative Selection in Drosophila
John Parsch, Sergey Novozhilov, Sarah S. Saminadin-Peter, Karen M. Wong, and Peter Andolfatto

Sperm Proteomics Reveals Intensified Selection on Mouse Sperm Membrane and Acrosome Genes
Steve Dorus, Elizabeth R. Wasbrough, Jennifer Busby, Elaine C. Wilkin, and Timothy L. Karr

Transcriptional Diversification and Functional Conservation between DELLA Proteins in Arabidopsis
Javier Gallego-Bartolomé, Eugenio G. Minguet, Jaime A. Marín, Salomé Prat, Miguel A. Blázquez, David Alabadí

Principal Component Analysis under Population Genetic Models of Range Expansion and Admixture
Olivier François, Mathias Currat, Nicolas Ray, Eunjung Han, Laurent Excoffier, and John Novembre

Monogamy Evolves through Multiple Mechanisms: Evidence from V1aR in Deer Mice
Leslie M. Turner, Adrian R. Young, Holger Römpler, Torsten Schöneberg, Steven M. Phelps, and Hopi E. Hoekstra

Human Variation in Short Regions Predisposed to Deep Evolutionary Conservation
Gabriela G. Loots and Ivan Ovcharenko

Performance of Relaxed-Clock Methods in Estimating Evolutionary Divergence Times and Their Credibility Intervals
Fabia U. Battistuzzi, Alan Filipski, S. Blair Hedges, and Sudhir Kumar

Analysis of Host – Parasite Incongruence in Papillomavirus Evolution Using Importance Sampling
Seena D. Shah, John Doorbar, and Richard A. Goldstein

Rodent Evolution: Back to the Root
Gennady Churakov, Manoj K. Sadasivuni, Kate R. Rosenbloom, Dorothée Huchon, Jürgen Brosius, Jürgen Schmitz

A Simple Multiallele Model and Its Application to Identifying Preferred – Unpreferred Codons Using Polymorphism Data
Kai Zeng

Escherichia coli rpoB Mutants Have Increased Evolvability in Proportion to Their Fitness Defects
Jeffrey E. Barrick, Mark R. Kauth, Christopher C. Strelioff, and Richard E. Lenski

Evolution of Outer Membrane b -Barrels from an Ancestral b b Hairpin
M. Remmert, A. Biegert, D. Linke, A. N. Lupas, and J. Söding

The Evolutionary Fate of the Genes Encoding the Purine Catabolic Enzymes in Hominoids, Birds, and Reptiles
Alaine C. Keebaugh and James W. Thomas

Gene Capture from across the Grass Family in the Allohexaploid Elymus repens (L.) Gould (Poaceae, Triticeae) as Evidenced by ITS, GBSSI, and Molecular Cytogenetics
Václav Mahelka and David Kopecký

ND6 Gene “Lost” and Found: Evolution of Mitochondrial Gene Rearrangement in Antarctic Notothenioids
Xuan Zhuang and C.-H. Christina Cheng

The Rate of Establishment of Complex Adaptations
Michael Lynch and Adam Abegg

Schizosaccharomyces pombe Possesses Two Paralogous Valyl-tRNA Synthetase Genes of Mitochondrial Origin
Wen-Chih Chiu, Chia-Pei Chang, Wei-Ling Wen, Shao-Win Wang, and Chien-Chia Wang

Bayesian Inference of the Demographic History of Chimpanzees
Daniel Wegmann and Laurent Excoffier

Insights into the Evolution of Mitochondrial Genome Size from Complete Sequences of Citrullus lanatus and Cucurbita pepo (Cucurbitaceae)
Andrew J. Alverson, XiaoXin Wei, Danny W. Rice, David B. Stern, Kerrie Barry, and Jeffrey D. Palmer

Identification and Genomic Analysis of Transcription Factors in Archaeal Genomes Exemplifies Their Functional Architecture and Evolutionary Origin
Ernesto Pérez-Rueda and Sarath Chandra Janga

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Synonimy rodziny Aristolochiaceae Juss., nom. cons.:

Asaraceae Vent.
Lactoridaceae Engl., nom. cons.
Sarumaceae Nakai, nom. nud.