The Plant Journal - 67 (2-3), 2011

The Plant Journal - 67 (2), 2011


Contents:

FEATURED ARTICLE


Cryptochrome 1 and phytochrome B control shade-avoidance responses in Arabidopsis via partially independent hormonal cascades (pages 195–207)

Mercedes M. Keller, Yvon Jaillais, Ullas V. Pedmale, Javier E. Moreno, Joanne Chory and Carlos L. Ballaré


Blue-light-mediated shade avoidance requires combined auxin and brassinosteroid action in Arabidopsis seedlings (pages 208–217)

Diederik H. Keuskamp, Rashmi Sasidharan, Irene Vos, Anton J. M. Peeters, Laurentius A. C. J. Voesenek and Ronald Pierik


ORIGINAL ARTICLES


The microRNA miR393 re-directs secondary metabolite biosynthesis away from camalexin and towards glucosinolates (pages 218–231)

Alexandre Robert-Seilaniantz, Dan MacLean, Yusuke Jikumaru, Lionel Hill, Shinjiro Yamaguchi, Yuji Kamiya and Jonathan D. G. Jones


Profiling of short RNAs during fleshy fruit development reveals stage-specific sRNAome expression patterns (pages 232–246)

Irina Mohorianu, Frank Schwach, Runchun Jing, Sara Lopez-Gomollon, Simon Moxon, Gyorgy Szittya, Karim Sorefan, Vincent Moulton and Tamas Dalmay


Malate transport by the vacuolar AtALMT6 channel in guard cells is subject to multiple regulation (pages 247–257)

Stefan Meyer, Joachim Scholz-Starke, Alexis De Angeli, Peter Kovermann, Bo Burla, Franco Gambale and Enrico Martinoia


Arabidopsis MAP Kinase Phosphatase 1 (AtMKP1) negatively regulates MPK6-mediated PAMP responses and resistance against bacteria (pages 258–268)

Jeffrey C. Anderson, Sebastian Bartels, Marina A. González Besteiro, Bationa Shahollari, Roman Ulm and Scott C. Peck


ICE1 Ser403 is necessary for protein stabilization and regulation of cold signaling and tolerance (pages 269–279)

Kenji Miura, Masaru Ohta, Machiko Nakazawa, Michiyuki Ono and Paul M. Hasegawa


Members of the RKD transcription factor family induce an egg cell-like gene expression program (pages 280–291)

Dávid Kőszegi, Amal J. Johnston, Twan Rutten, Andreas Czihal, Lothar Altschmied, Jochen Kumlehn, Samuel E. J. Wüst, Olga Kirioukhova, Jacqueline Gheyselinck, Ueli Grossniklaus and Helmut Bäumlein


Deep sequencing of small RNAs specifically associated with Arabidopsis AGO1 and AGO4 uncovers new AGO functions (pages 292–304)

Huan Wang, Xiuren Zhang, Jun Liu, Takatoshi Kiba, Jongchan Woo, Tolulope Ojo, Markus Hafner, Thomas Tuschl, Nam-Hai Chua and Xiu-Jie Wang


Micro-collinearity and genome evolution in the vicinity of an ethylene receptor gene of cultivated diploid and allotetraploid coffee species (Coffea) (pages 305–317)

Qingyi Yu, Romain Guyot, Alexandre de Kochko, Anne Byers, Rafael Navajas-Pérez, Brennick J. Langston, Christine Dubreuil-Tranchant, Andrew H. Paterson, Valérie Poncet, Chifumi Nagai and Ray Ming


PROTON GRADIENT REGULATION 3 recognizes multiple targets with limited similarity and mediates translation and RNA stabilization in plastids (pages 318–327)

Wenhe Cai, Kenji Okuda, Lianwei Peng and Toshiharu Shikanai


OVATE FAMILY PROTEIN4 (OFP4) interaction with KNAT7 regulates secondary cell wall formation in Arabidopsis thaliana (pages 328–341)

Eryang Li, Shucai Wang, Yuanyuan Liu, Jin-Gui Chen and Carl J. Douglas


Two Arabidopsis cytochrome P450 monooxygenases, CYP714A1 and CYP714A2, function redundantly in plant development through gibberellin deactivation (pages 342–353)

Yingying Zhang, Baichen Zhang, Dawei Yan, Weixin Dong, Weibing Yang, Qun Li, Longjun Zeng, Jianjun Wang, Linyou Wang, Leslie M. Hicks and Zuhua He


Metabolomics reveals comprehensive reprogramming involving two independent metabolic responses of Arabidopsis to UV-B light (pages 354–369)

Miyako Kusano, Takayuki Tohge, Atsushi Fukushima, Makoto Kobayashi, Naomi Hayashi, Hitomi Otsuki, Youichi Kondou, Hiroto Goto, Mika Kawashima, Fumio Matsuda, Rie Niida, Minami Matsui, Kazuki Saito and Alisdair R. Fernie


Assigning DYW-type PPR proteins to RNA editing sites in the funariid mosses Physcomitrella patens and Funaria hygrometrica (pages 370–380)

Mareike Rüdinger, Péter Szövényi, Stefan A. Rensing and Volker Knoop


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The Plant Journal - 67 (3), 2011


Contents:

ORIGINAL ARTICLES


Mutational analysis of Arabidopsis chloroplast polynucleotide phosphorylase reveals roles for both RNase PH core domains in polyadenylation, RNA 3'-end maturation and intron degradation (pages 381–394)

Arnaud Germain, Shira Herlich, Shirley Larom, Sang Hu Kim, Gadi Schuster and David B. Stern


Control of root hair development in Arabidopsis thaliana by an endoplasmic reticulum anchored member of the R2R3-MYB transcription factor family (pages 395–405)

Erin Slabaugh, Michael Held and Federica Brandizzi


TRANSPARENT TESTA1 interacts with R2R3-MYB factors and affects early and late steps of flavonoid biosynthesis in the endothelium of Arabidopsis thaliana seeds (pages 406–419)

Ingo Appelhagen, Gui-Hua Lu, Gunnar Huep, Elmon Schmelzer, Bernd Weisshaar and Martin Sagasser


GMI1, a structural-maintenance-of-chromosomes-hinge domain-containing protein, is involved in somatic homologous recombination in Arabidopsis (pages 420–433)

Gudrun Böhmdorfer, Alexander Schleiffer, Reinhard Brunmeir, Stefan Ferscha, Viktoria Nizhynska, Jaroslav Kozák, Karel J. Angelis, David P. Kreil and Dieter Schweizer


Expression of rice SUB1A and SUB1C transcription factors in Arabidopsis uncovers flowering inhibition as a submergence tolerance mechanism (pages 434–446)

Julián M. Pena-Castro, Martijn van Zanten, Seung C. Lee, Mohini R. Patel, Laurentius A. J. C. Voesenek, Takeshi Fukao and Julia Bailey-Serres


Antagonistic role of 9-lipoxygenase-derived oxylipins and ethylene in the control of oxidative stress, lipid peroxidation and plant defence (pages 447–458)

Miguel A. López, Jorge Vicente, Satish Kulasekaran, Tamara Vellosillo, Marta Martínez, Maria L. Irigoyen, Tomas Cascón, Gerard Bannenberg, Mats Hamberg and Carmen Castresana


The receptor-like kinase SlSERK1 is required for Mi-1-mediated resistance to potato aphids in tomato (pages 459–471)

Sophie Mantelin, Hsuan-Chieh Peng, Beibei Li, Hagop S. Atamian, Frank L. W. Takken and Isgouhi Kaloshian


The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling (pages 472–484)

Yuka Kitomi, Hiroko Ito, Tokunori Hobo, Koichiro Aya, Hidemi Kitano and Yoshiaki Inukai


A mitochondrial GABA permease connects the GABA shunt and the TCA cycle, and is essential for normal carbon metabolism (pages 485–498)

Simon Michaeli, Aaron Fait, Kelly Lagor, Adriano Nunes-Nesi, Nicole Grillich, Ayelet Yellin, Dana Bar, Munziba Khan, Alisdair R. Fernie, Frank J. Turano and Hillel Fromm


A NAC domain protein family contributing to the regulation of wood formation in poplar (pages 499–512)

Misato Ohtani, Nobuyuki Nishikubo, Bo Xu, Masatoshi Yamaguchi, Nobutaka Mitsuda, Nadia Goué, Fusun Shi, Masaru Ohme-Takagi and Taku Demura


FEATURED ARTICLE


Computational analysis of storage synthesis in developing Brassica napus L. (oilseed rape) embryos: flux variability analysis in relation to 13C metabolic flux analysis (pages 513–525)

Jordan Hay and Jörg Schwender


TECHNICAL ADVANCE


Metabolic network reconstruction and flux variability analysis of storage synthesis in developing oilseed rape (Brassica napus L.) embryos (pages 526–541)

Jordan Hay and Jörg Schwender


Quantitative analysis of dynamic protein–protein interactions in planta by a floated-leaf luciferase complementation imaging (FLuCI) assay using binary Gateway vectors (pages 542–553)

Christian Gehl, David Kaufholdt, Domenica Hamisch, Rolf Bikker, Jörg Kudla, Ralf R. Mendel and Robert Hänsch


Source verification of mis-identified Arabidopsis thaliana accessions (pages 554–566)

Alison E. Anastasio, Alexander Platt, Matthew Horton, Erich Grotewold, Randy Scholl, Justin O. Borevitz, Magnus Nordborg and Joy Bergelson


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