Genome Biology and Evolution - 4 (8), 2012

Contents:

Research Articles

        Frauke Baymann, Barbara Schoepp-Cothenet, Evelyne Lebrun, Robert van Lis, and Wolfgang Nitschke
    Phylogeny of Rieske/cytb Complexes with a Special Focus on the Haloarchaeal Enzymes
   
        Kristen S. Swithers, Amanda K. Petrus, Michael A. Secinaro, Camilla L. Nesbo, J. Peter Gogarten, Kenneth M. Noll, and Nicholas C. Butzin
    Vitamin B12 Synthesis and Salvage Pathways Were Acquired by Horizontal Gene Transfer to the Thermotogales
  
        Georgia Tsagkogeorga, Vincent Cahais, and Nicolas Galtier
    The Population Genomics of a Fast Evolver: High Levels of Diversity, Functional Constraint, and Molecular Adaptation in the Tunicate Ciona intestinalis
 
        Danielle Venton
    Highlight—Lowly Sea Cucumber Leads the Evolutionary Race
  
        Bertanne Visser, Dick Roelofs, Daniel A. Hahn, Peter E. A. Teal, Janine Mariën, and Jacintha Ellers
    Transcriptional Changes Associated with Lack of Lipid Synthesis in Parasitoids
  
Invited Review

        Gabriel Luz Wallau, Mauro Freitas Ortiz, and Elgion Lucio Silva Loreto
    Horizontal Transposon Transfer in Eukarya: Detection, Bias, and Perspectives
   
Letters

        Olga Zhaxybayeva, Kristen S. Swithers, Julia Foght, Anna G. Green, David Bruce, Chris Detter, Shunsheng Han, Hazuki Teshima, James Han, Tanja Woyke, Sam Pitluck, Matt Nolan, Natalia Ivanova, Amrita Pati, Miriam L. Land, Marlena Dlutek, W. Ford Doolittle, Kenneth M. Noll, and Camilla L. Nesbo
    Genome Sequence of the Mesophilic Thermotogales Bacterium Mesotoga prima MesG1.Ag.4.2 Reveals the Largest Thermotogales Genome To Date
   
        Janet S. Sinsheimer, Roderick J. A. Little, and James A. Lake
    Rooting Gene Trees without Outgroups: EP Rooting
   
        Devin M. Drown, Kevin M. Preuss, and Michael J. Wade
    Evidence of a Paucity of Genes That Interact with the Mitochondrion on the X in Mammals
 
        Danielle Venton
    Highlight: “Keeping the Boys in the Conversation: Male Fitness Shapes the Location of Genes that Interact with Mitochondria”
 

Biogeosciences - 9 (5), 2012

Contents:

Seasonal variation in nitrogen pools and 15N/13C natural abundances in different tissues of grassland plants
L. Wang and J. K. Schjoerring

The influence of model grid resolution on estimation of national scale nitrogen deposition and exceedance of critical loads
A. J. Dore, M. Kryza, J. R. Hall, S. Hallsworth, V. J. D. Keller, M. Vieno, and M. A. Sutton

Are ammonia emissions from field-applied slurry substantially over-estimated in European emission inventories?
J. Sintermann, A. Neftel, C. Ammann, C. Häni, A. Hensen, B. Loubet, and C. R. Flechard

The nitrogen isotope effect of benthic remineralization-nitrification-denitrification coupling in an estuarine environment
M. Alkhatib, M. F. Lehmann, and P. A. del Giorgio

Modelling the contribution of short-range atmospheric and hydrological transfers to nitrogen fluxes, budgets and indirect emissions in rural landscapes
J.-L. Drouet, S. Duretz, P. Durand, and P. Cellier

Photo-lability of deep ocean dissolved black carbon
A. Stubbins, J. Niggemann, and T. Dittmar

Denitrification and inference of nitrogen sources in the karstic Floridan Aquifer
J. B. Heffernan, A. R. Albertin, M. L. Fork, B. G. Katz, and M. J. Cohen

Preface ''Nitrogen & Global Change''
M. A. Sutton, S. Reis, G. Billen, P. Cellier, J. W. Erisman, A. R. Mosier, E. Nemitz, J. Sprent, H. van Grinsven, M. Voss, C. Beier, and U. Skiba

Role of land surface processes and diffuse/direct radiation partitioning in simulating the European climate
E. L. Davin and S. I. Seneviratne

A hypothesis linking sub-optimal seawater pCO2 conditions for cnidarian-Symbiodinium symbioses with the exceedence of the interglacial threshold (>260 ppmv)
S. A. Wooldridge

Calcification in the planktonic foraminifera Globigerina bulloides linked to phosphate concentrations in surface waters of the North Atlantic Ocean
D. Aldridge, C. J. Beer, and D. A. Purdie

Decadal variability of soil CO2, NO, N2O, and CH4 fluxes at the Höglwald Forest, Germany
G. J. Luo, N. Brüggemann, B. Wolf, R. Gasche, R. Grote, and K. Butterbach-Bahl

Experimental mineralization of crustacean eggs: new implications for the fossilization of Precambrian–Cambrian embryos
D. Hippler, N. Hu, M. Steiner, G. Scholtz, and G. Franz

How significant is submarine groundwater discharge and its associated dissolved inorganic carbon in a river-dominated shelf system?
Q. Liu, M. Dai, W. Chen, C.-A. Huh, G. Wang, Q. Li, and M. A. Charette

Preformed and regenerated phosphate in ocean general circulation models: can right total concentrations be wrong?
O. Duteil, W. Koeve, A. Oschlies, O. Aumont, D. Bianchi, L. Bopp, E. Galbraith, R. Matear, J. K. Moore, J. L. Sarmiento, and J. Segschneider

Topo-edaphic controls over woody plant biomass in South African savannas
M. S. Colgan, G. P. Asner, S. R. Levick, R. E. Martin, and O. A. Chadwick

Preface "Biotic interactions and biogeochemical processes in the soil environment"
J.-A. Subke, M. S. Carbone, M. Khomik, P. Stoy, and M. Bahn

The composition and flux of particulate and dissolved carbohydrates from the Rhone River into the Mediterranean Sea
C. Panagiotopoulos, R. Sempéré, J. Para, P. Raimbault, C. Rabouille, and B. Charriere

A synthesis of carbon dioxide emissions from fossil-fuel combustion
R. J. Andres, T. A. Boden, F.-M. Bréon, P. Ciais, S. Davis, D. Erickson, J. S. Gregg, A. Jacobson, G. Marland, J. Miller, T. Oda, J. G. J. Olivier, M. R. Raupach, P. Rayner, and K. Treanton

Possible source of ancient carbon in phytolith concentrates from harvested grasses
G. M. Santos, A. Alexandre, J. R. Southon, K. K. Treseder, R. Corbineau, and P. E. Reyerson

Combined effects of inorganic carbon and light on Phaeocystis globosa Scherffel (Prymnesiophyceae)
A. Hoogstraten, M. Peters, K. R. Timmermans, and H. J. W. de Baar

Marine bivalve shell geochemistry and ultrastructure from modern low pH environments: environmental effect versus experimental bias
S. Hahn, R. Rodolfo-Metalpa, E. Griesshaber, W. W. Schmahl, D. Buhl, J. M. Hall-Spencer, C. Baggini, K. T. Fehr, and A. Immenhauser

Timescales for the development of methanogenesis and free gas layers in recently-deposited sediments of Arkona Basin (Baltic Sea)
J. M. Mogollón, A. W. Dale, H. Fossing, and P. Regnier

===============