Genome Biology and Evolution - 3, 2011

Contents:


Shigehiro Kuraku and Shigeru Kuratani
Genome-Wide Detection of Gene Extinction in Early Mammalian Evolution

Alexander Neef, Amparo Latorre, Juli Peretó, Francisco J. Silva, Miguel Pignatelli, and Andrés Moya
Genome Economization in the Endosymbiont of the Wood Roach Cryptocercus punctulatus Due to Drastic Loss of Amino Acid Synthesis Capabilities

Shao-Lun Liu, Gregory J. Baute, and Keith L. Adams
Organ and Cell Type–Specific Complementary Expression Patterns and Regulatory Neofunctionalization between Duplicated Genes in Arabidopsis thaliana

Weilong Hao, Jennifer H. Ma, Keisha Warren, Raymond S.W. Tsang, Donald E. Low, Frances B. Jamieson, and David C. Alexander
Extensive Genomic Variation within Clonal Complexes of Neisseria meningitidis

David Managadze, Igor B. Rogozin, Diana Chernikova, Svetlana A. Shabalina, and Eugene V. Koonin
Negative Correlation between Expression Level and Evolutionary Rate of Long Intergenic Noncoding RNAs

Axel Künstner, Benoit Nabholz, and Hans Ellegren
Significant Selective Constraint at 4-Fold Degenerate Sites in the Avian Genome and Its Consequence for Detection of Positive Selection

Melissa A. Toups, James B. Pease, and Matthew W. Hahn
No Excess Gene Movement Is Detected off the Avian or Lepidopteran Z Chromosome

Corey M. Hudson, Emily E. Puckett, Michaël Bekaert, J. Chris Pires, and Gavin C. Conant
Selection for Higher Gene Copy Number after Different Types of Plant Gene Duplications

Hiroaki Sakai, Hiroshi Mizuno, Yoshihiro Kawahara, Hironobu Wakimoto, Hiroshi Ikawa, Hiroyuki Kawahigashi, Hiroyuki Kanamori, Takashi Matsumoto, Takeshi Itoh, and Brandon S. Gaut
Retrogenes in Rice (Oryza sativa L. ssp. japonica) Exhibit Correlated Expression with Their Source Genes

James R. Doroghazi and Daniel H. Buckley
A Model for the Effect of Homologous Recombination on Microbial Diversification

Bojian Zhong, Oliver Deusch, Vadim V. Goremykin, David Penny, Patrick J. Biggs, Robin A. Atherton, Svetlana V. Nikiforova, and Peter James Lockhart
Systematic Error in Seed Plant Phylogenomics

Danielle Venton
Highlight: The Degenerating Y Chromosome: Under the Pressures of Sex and Selection

Vera B. Kaiser, Qi Zhou, and Doris Bachtrog
Nonrandom Gene Loss from the Drosophila miranda Neo-Y Chromosome

Seth M. Bybee, Heather Bracken-Grissom, Benjamin D. Haynes, Russell A. Hermansen, Robert L. Byers, Mark J. Clement, Joshua A. Udall, Edward R. Wilcox, and Keith A. Crandall
Targeted Amplicon Sequencing (TAS): A Scalable Next-Gen Approach to Multilocus, Multitaxa Phylogenetics

Tomasz Żemojtel, Szymon M. Kiełbasa, Peter F. Arndt, Sarah Behrens, Guillaume Bourque, and Martin Vingron
CpG Deamination Creates Transcription Factor–Binding Sites with High Efficiency

Chung-Shien Wu, Ya-Nan Wang, Chi-Yao Hsu, Ching-Ping Lin, and Shu-Miaw Chaw
Loss of Different Inverted Repeat Copies from the Chloroplast Genomes of Pinaceae and Cupressophytes and Influence of Heterotachy on the Evaluation of Gymnosperm Phylogeny

Shunsuke Suzuki, Geoffrey Shaw, Tomoko Kaneko-Ishino, Fumitoshi Ishino, and Marilyn B. Renfree
The Evolution of Mammalian Genomic Imprinting Was Accompanied by the Acquisition of Novel CpG Islands

Ofir Cohen and Tal Pupko
Inference of Gain and Loss Events from Phyletic Patterns Using Stochastic Mapping and Maximum Parsimony—A Simulation Study

Damien J. Fleetwood, Anar K. Khan, Richard D. Johnson, Carolyn A. Young, Shipra Mittal, Ruth E. Wrenn, Uljana Hesse, Simon J. Foster, Christopher L. Schardl, and Barry Scott
Abundant Degenerate Miniature Inverted-Repeat Transposable Elements in Genomes of Epichloid Fungal Endophytes of Grasses

Benjamin A. Wilson and Joanna Masel
Putatively Noncoding Transcripts Show Extensive Association with Ribosomes

Yasuhiro Kitazoe, Hirohisa Kishino, Masami Hasegawa, Atsushi Matsui, Nick Lane, and Masashi Tanaka
Stability of Mitochondrial Membrane Proteins in Terrestrial Vertebrates Predicts Aerobic Capacity and Longevity

Danielle Venton
Highlight: Stability of Mitochondrial Membrane Proteins in Terrestrial Vertebrates Predicts Aerobic Capacity and Longevity

Christian Woehle, Tal Dagan, William F. Martin, and Sven B. Gould
Red and Problematic Green Phylogenetic Signals among Thousands of Nuclear Genes from the Photosynthetic and Apicomplexa-Related Chromera velia

Tanja Slotte, Thomas Bataillon, Troels T. Hansen, Kate St. Onge, Stephen I. Wright, and Mikkel H. Schierup
Genomic Determinants of Protein Evolution and Polymorphism in Arabidopsis
Genome Biol Evol (2011) Vol. 3 1210-1219 first published online September 16, 2011 doi:10.1093/gbe/evr094

Anke Konrad, Ashley I. Teufel, Johan A. Grahnen, and David A. Liberles
Toward a General Model for the Evolutionary Dynamics of Gene Duplicates

Stephen P. Moss, Domino A. Joyce, Stuart Humphries, Katherine J. Tindall, and David H. Lunt
Comparative Analysis of Teleost Genome Sequences Reveals an Ancient Intron Size Expansion in the Zebrafish Lineage

Nicolas Cerveau, Sébastien Leclercq, Elodie Leroy, Didier Bouchon, and Richard Cordaux
Short- and Long-term Evolutionary Dynamics of Bacterial Insertion Sequences: Insights from Wolbachia Endosymbionts

Alex J. McCarthy, Adam A. Witney, Katherine A. Gould, Arshnee Moodley, Luca Guardabassi, Andreas Voss, Olivier Denis, Els M. Broens, Jason Hinds, and Jodi A. Lindsay
The Distribution of Mobile Genetic Elements (MGEs) in MRSA CC398 Is Associated with Both Host and Country

Nathaniel M. Hallinan and David R. Lindberg
Comparative Analysis of Chromosome Counts Infers Three Paleopolyploidies in the Mollusca

Hye-Ran Lee, Karen E. Hayden, and Huntington F. Willard
Organization and Molecular Evolution of CENP-A–Associated Satellite DNA Families in a Basal Primate Genome

Kiyoshi Ezawa, Kazuho Ikeo, Takashi Gojobori, and Naruya Saitou
Evolutionary Patterns of Recently Emerged Animal Duplogs

Michael Lynch
The Lower Bound to the Evolution of Mutation Rates

Hiroki Goto, Oliver A. Ryder, Allison R. Fisher, Bryant Schultz, Sergei L. Kosakovsky Pond, Anton Nekrutenko, and Kateryna D. Makova
A Massively Parallel Sequencing Approach Uncovers Ancient Origins and High Genetic Variability of Endangered Przewalski's Horses

Danielle Venton
Highlight: A Massively Parallel Sequencing Approach Uncovers Ancient Origins and High Genetic Variability of Endangered Przewalski’s Horses

Georgii A. Bazykin and Alexey S. Kondrashov
Detecting Past Positive Selection through Ongoing Negative Selection

Ricard Albalat, Frédéric Brunet, Vincent Laudet, and Michael Schubert
Evolution of Retinoid and Steroid Signaling: Vertebrate Diversification from an Amphioxus Perspective

Matthew K. Fujita, Scott V. Edwards, and Chris P. Ponting
The Anolis Lizard Genome: An Amniote Genome without Isochores

Nicholas Delihas
Impact of Small Repeat Sequences on Bacterial Genome Evolution

Hua Ying and Gavin Huttley
Exploiting CpG Hypermutability to Identify Phenotypically Significant Variation Within Human Protein-Coding Genes

Lisa G. McFerrin and William R. Atchley
Evolution of the Max and Mlx Networks in Animals

Leonardo Arbiza, Mateus Patricio, Hernán Dopazo, and David Posada
Genome-Wide Heterogeneity of Nucleotide Substitution Model Fit

Deborah C. Holt, Matthew T.G. Holden, Steven Y.C. Tong, Santiago Castillo-Ramirez, Louise Clarke, Michael A. Quail, Bart J. Currie, Julian Parkhill, Stephen D. Bentley, Edward J. Feil, and Philip M. Giffard
A Very Early-Branching Staphylococcus aureus Lineage Lacking the Carotenoid Pigment Staphyloxanthin

Suo Qiu, Kai Zeng, Tanja Slotte, Stephen Wright, and Deborah Charlesworth
Reduced Efficacy of Natural Selection on Codon Usage Bias in Selfing Arabidopsis and Capsella Species

Sébastien Verne, Barry Jaquish, Rick White, Carol Ritland, and Kermit Ritland
Global Transcriptome Analysis of Constitutive Resistance to the White Pine Weevil in Spruce

Philip L. F. Johnson and Ines Hellmann
Mutation Rate Distribution Inferred from Coincident SNPs and Coincident Substitutions

Laurie S. Stevison, Kenneth B. Hoehn, and Mohamed A. F. Noor
Effects of Inversions on Within- and Between-Species Recombination and Divergence

Masatoshi Nei and Masafumi Nozawa
Roles of Mutation and Selection in Speciation: From Hugo de Vries to the Modern Genomic Era

Gregory I. Lang and Andrew W. Murray
Mutation Rates across Budding Yeast Chromosome VI Are Correlated with Replication Timing

Jessica L. Crisci, Alex Wong, Jeffrey M. Good, and Jeffrey D. Jensen
On Characterizing Adaptive Events Unique to Modern Humans

David Alvarez-Ponce and James O. McInerney
The Human Genome Retains Relics of Its Prokaryotic Ancestry: Human Genes of Archaebacterial and Eubacterial Origin Exhibit Remarkable Differences

Florent Lassalle, Tony Campillo, Ludovic Vial, Jessica Baude, Denis Costechareyre, David Chapulliot, Malek Shams, Danis Abrouk, Céline Lavire, Christine Oger-Desfeux, Florence Hommais, Laurent Guéguen, Vincent Daubin, Daniel Muller, and Xavier Nesme
Genomic Species Are Ecological Species as Revealed by Comparative Genomics in Agrobacterium tumefaciens

Yedael Y. Waldman, Tamir Tuller, Alon Keinan, and Eytan Ruppin
Selection for Translation Efficiency on Synonymous Polymorphisms in Recent Human Evolution

David Roy Smith
Extending the Limited Transfer Window Hypothesis to Inter-organelle DNA Migration

A. Darracq, J. S. Varré, L. Maréchal-Drouard, A. Courseaux, V. Castric, P. Saumitou-Laprade, S. Oztas, P. Lenoble, B. Vacherie, V. Barbe, and P. Touzet
Structural and Content Diversity of Mitochondrial Genome in Beet: A Comparative Genomic Analysis

Richard Jovelin and Patrick C. Phillips
Expression Level Drives the Pattern of Selective Constraints along the Insulin/Tor Signal Transduction Pathway in Caenorhabditis

Naruo Nikoh, Takahiro Hosokawa, Kenshiro Oshima, Masahira Hattori, and Takema Fukatsu
Reductive Evolution of Bacterial Genome in Insect Gut Environment

Jeffrey D. Jensen and Doris Bachtrog
Characterizing the Influence of Effective Population Size on the Rate of Adaptation: Gillespie’s Darwin Domain

Sabrina N. Trojet, Anne Caumont-Sarcos, Elsa Perrody, André M. Comeau, and H. M. Krisch
The gp38 Adhesins of the T4 Superfamily: A Complex Modular Determinant of the Phage’s Host Specificity

Maria Warnefors and Adam Eyre-Walker
The Accumulation of Gene Regulation Through Time

Eric S. Ho and Samuel I. Gunderson
Long Conserved Fragments Upstream of Mammalian Polyadenylation Sites

Todd A. Castoe, Kathryn T. Hall, Marcel L. Guibotsy Mboulas, Wanjun Gu, A.P. Jason de Koning, Samuel E. Fox, Alexander W. Poole, Vijetha Vemulapalli, Juan M. Daza, Todd Mockler, Eric N. Smith, Cédric Feschotte, and David D. Pollock
Discovery of Highly Divergent Repeat Landscapes in Snake Genomes Using High-Throughput Sequencing

Alvina G. Lai, Matthew Denton-Giles, Bernd Mueller-Roeber, Jos H. M. Schippers, and Paul P. Dijkwel
Positional Information Resolves Structural Variations and Uncovers an Evolutionarily Divergent Genetic Locus in Accessions of Arabidopsis thaliana

Sol Katzman, John A. Capra, David Haussler, and Katherine S. Pollard
Ongoing GC-Biased Evolution Is Widespread in the Human Genome and Enriched Near Recombination Hot Spots

Scott R. Miller, A.Michelle Wood, Robert E. Blankenship, Maria Kim, and Steven Ferriera
Dynamics of Gene Duplication in the Genomes of Chlorophyll d-Producing Cyanobacteria: Implications for the Ecological Niche

Federico G. Hoffmann, Juan C. Opazo, and Jay F. Storz
Differential Loss and Retention of Cytoglobin, Myoglobin, and Globin-E during the Radiation of Vertebrates

Jessica W. Leigh, François-Joseph Lapointe, Philippe Lopez, and Eric Bapteste
Evaluating Phylogenetic Congruence in the Post-Genomic Era

Manuel Irimia, Ignacio Maeso, Demián Burguera, Matías Hidalgo-Sánchez, Luis Puelles, Scott W. Roy, Jordi Garcia-Fernandez, and José Luis Ferran
Contrasting 5' and 3' Evolutionary Histories and Frequent Evolutionary Convergence in Meis/hth Gene Structures

Wilfried Haerty and G. Brian Golding
Increased Polymorphism Near Low-Complexity Sequences across the Genomes of Plasmodium falciparum Isolates

Robert Piskol and Wolfgang Stephan
The Role of the Effective Population Size in Compensatory Evolution

John A. Capra and Katherine S. Pollard
Substitution Patterns Are GC-Biased in Divergent Sequences across the Metazoans

Jean-Simon Brouard, Christian Otis, Claude Lemieux, and Monique Turmel
The Chloroplast Genome of the Green Alga Schizomeris leibleinii (Chlorophyceae) Provides Evidence for Bidirectional DNA Replication from a Single Origin in the Chaetophorales

James R. Walters and Thomas J. Hardcastle
Getting a Full Dose? Reconsidering Sex Chromosome Dosage Compensation in the Silkworm, Bombyx mori

Filipe G. Vieira and Julio Rozas
Comparative Genomics of the Odorant-Binding and Chemosensory Protein Gene Families across the Arthropoda: Origin and Evolutionary History of the Chemosensory System

Mary M. Rorick and Günter P. Wagner
Protein Structural Modularity and Robustness Are Associated with Evolvability

Laura Baldo, M.Emília Santos, and Walter Salzburger
Comparative Transcriptomics of Eastern African Cichlid Fishes Shows Signs of Positive Selection and a Large Contribution of Untranslated Regions to Genetic Diversity

Wataru Kai, Kiyoshi Kikuchi, Sumanty Tohari, Ah Keng Chew, Alice Tay, Atushi Fujiwara, Sho Hosoya, Hiroaki Suetake, Kiyoshi Naruse, Sydney Brenner, Yuzuru Suzuki, and Byrappa Venkatesh
Integration of the Genetic Map and Genome Assembly of Fugu Facilitates Insights into Distinct Features of Genome Evolution in Teleosts and Mammals

Xiuwei Zhang, Martin Kupiec, Uri Gophna, and Tamir Tuller
Analysis of Coevolving Gene Families Using Mutually Exclusive Orthologous Modules

Seong Hwan Park, Ondrej Podlaha, Wendy E. Grus, and Jianzhi Zhang
The Microevolution of V1r Vomeronasal Receptor Genes in Mice

David S. Lawrie, Dmitri A. Petrov, and Philipp W. Messer
Faster than Neutral Evolution of Constrained Sequences: The Complex Interplay of Mutational Biases and Weak Selection

Daniel Moog, Simone Stork, Stefan Zauner, and Uwe-G. Maier
In Silico and In Vivo Investigations of Proteins of a Minimized Eukaryotic Cytoplasm

Julia Hecht, Felix Grewe, and Volker Knoop
Extreme RNA Editing in Coding Islands and Abundant Microsatellites in Repeat Sequences of Selaginella moellendorffii Mitochondria: The Root of Frequent Plant mtDNA Recombination in Early Tracheophytes

C. A. Whittle, Y. Sun, and H. Johannesson
Evolution of Synonymous Codon Usage in Neurospora tetrasperma and Neurospora discreta

Guang-Zhong Wang, Martin J. Lercher, and Laurence D. Hurst
Transcriptional Coupling of Neighboring Genes and Gene Expression Noise: Evidence that Gene Orientation and Noncoding Transcripts Are Modulators of Noise

Chung-Shien Wu, Ching-Ping Lin, Chi-Yao Hsu, Rui-Jiang Wang, and Shu-Miaw Chaw
Comparative Chloroplast Genomes of Pinaceae: Insights into the Mechanism of Diversified Genomic Organizations

Huifeng Jiang, Lin Xu, and Zhenglong Gu
Growth of Novel Epistatic Interactions by Gene Duplication

Inaho Danjoh, Kaoru Saijo, Takashi Hiroyama, and Yukio Nakamura
The Sonoda–Tajima Cell Collection: A Human Genetics Research Resource with Emphasis on South American Indigenous Populations

Daudi Jjingo, Ahsan Huda, Madhumati Gundapuneni, Leonardo Marino-Ramírez, and I. King Jordan
Effect of the Transposable Element Environment of Human Genes on Gene Length and Expression

Cécile Ané
Detecting Phylogenetic Breakpoints and Discordance from Genome-Wide Alignments for Species Tree Reconstruction

Yves Clément and Peter F. Arndt
Substitution Patterns Are Under Different Influences in Primates and Rodents

Maud I. Tenaillon, Matthew B. Hufford, Brandon S. Gaut, and Jeffrey Ross-Ibarra
Genome Size and Transposable Element Content as Determined by High-Throughput Sequencing in Maize and Zea luxurians

Bethany N. Kent, Leonidas Salichos, John G. Gibbons, Antonis Rokas, Irene L. G. Newton, Michael E. Clark, and Seth R. Bordenstein
Complete Bacteriophage Transfer in a Bacterial Endosymbiont (Wolbachia) Determined by Targeted Genome Capture

Gaelen R. Burke and Nancy A. Moran
Massive Genomic Decay in Serratia symbiotica, a Recently Evolved Symbiont of Aphids

Tina Koestler and Ingo Ebersberger
Zygomycetes, Microsporidia, and the Evolutionary Ancestry of Sex Determination

Haruo Suzuki, Tristan Lefébure, Melissa Jane Hubisz, Paulina Pavinski Bitar, Ping Lang, Adam Siepel, and Michael J. Stanhope
Comparative Genomic Analysis of the Streptococcus dysgalactiae Species Group: Gene Content, Molecular Adaptation, and Promoter Evolution

Takeshi Kawakami, Preeti Dhakal, Angela N. Katterhenry, Chelsea A. Heatherington, and Mark C. Ungerer
Transposable Element Proliferation and Genome Expansion Are Rare in Contemporary Sunflower Hybrid Populations Despite Widespread Transcriptional Activity of LTR Retrotransposons

Tim Connallon and Andrew G. Clark
Association between Sex-Biased Gene Expression and Mutations with Sex-Specific Phenotypic Consequences in Drosophila

Gregor Felsner, Maik S. Sommer, Nicole Gruenheit, Franziska Hempel, Daniel Moog, Stefan Zauner, William Martin, and Uwe G. Maier
ERAD Components in Organisms with Complex Red Plastids Suggest Recruitment of a Preexisting Protein Transport Pathway for the Periplastid Membrane

Sayaka Miura, Masafumi Nozawa, and Masatoshi Nei
Evolutionary Changes of the Target Sites of Two MicroRNAs Encoded in the Hox Gene Cluster of Drosophila and Other Insect Species

Peter Andolfatto, Karen M. Wong, and Doris Bachtrog
Effective Population Size and the Efficacy of Selection on the X Chromosomes of Two Closely Related Drosophila Species

D.E. Janes, C. Chapus, Y. Gondo, D.F. Clayton, S. Sinha, C.A. Blatti, C.L. Organ, M.K. Fujita, C.N. Balakrishnan, and S.V. Edwards
Reptiles and Mammals Have Differentially Retained Long Conserved Noncoding Sequences from the Amniote Ancestor

David Alvarez-Ponce, Montserrat Aguadé, and Julio Rozas
Comparative Genomics of the Vertebrate Insulin/TOR Signal Transduction Pathway: A Network-Level Analysis of Selective Pressures

Robert M. Waterhouse, Evgeny M. Zdobnov, and Evgenia V. Kriventseva
Correlating Traits of Gene Retention, Sequence Divergence, Duplicability and Essentiality in Vertebrates, Arthropods, and Fungi

Ken Daigoro Yokoyama, Jeffrey L. Thorne, and Gregory A. Wray
Coordinated Genome-Wide Modifications within Proximal Promoter Cis-regulatory Elements during Vertebrate Evolution

Yong-Hwee E. Loh, Soojin V. Yi, and J.Todd Streelman
Evolution of MicroRNAs and the Diversification of Species

Goro Tanifuji, Natalie Donaher, Marlena Dlutek, Travis J. Wheeler,Naoko T. Onodera, and John M. Archibald
Complete Nucleomorph Genome Sequence of the Nonphotosynthetic Alga Cryptomonas paramecium Reveals a Core Nucleomorph Gene Set

Daniel H. Huson and Celine Scornavacca
A Survey of Combinatorial Methods for Phylogenetic Networks

Peter A. Novick, Mark Floumanhaft, Jeremy D. Smith, David A. Ray, and Stéphane Boissinot
The Evolution and Diversity of DNA Transposons in the Genome of the Lizard Anolis carolinensis

Special Collection

Bill Martin and Takashi Gojobori
Introduction to the Special Series

Werner Arber
Molecular Darwinism: The Contingency of Spontaneous Genetic Variation

Stilianos Arhondakis, Fabio Auletta, and Giorgio Bernardi
Isochores and the Regulation of Gene Expression in the Human Genome

S. Castellana, S. Vicario, and C. Saccone
Evolutionary Patterns of the Mitochondrial Genome in Metazoa: Exploring the Role of Mutation and Selection in Mitochondrial Protein–Coding Genes

Walter J. Gehring
Chance and Necessity in Eye Evolution

Eviatar Nevo
Evolution Under Environmental Stress at Macro- and Microscales

Tomoko Ohta
Near-Neutrality, Robustness, and Epigenetics

Agnes Ullmann
In Memoriam: Jacques Monod (1910–1976)

Jun Zhou, Erik B. Dopman, Bernardo Lemos, and Daniel L. Hartl
Copy-Number Variation: The Balance between Gene Dosage and Expression in Drosophila melanogaster

Genome Reports

Maria D. Logacheva, Mikhail I. Schelkunov, and Aleksey A. Penin
Sequencing and Analysis of Plastid Genome in Mycoheterotrophic Orchid Neottia nidus-avis

Philippe Colson, Svetlana A. Shabalina, Ghislain Fournous, Bernard La Scola, Catherine Robert, Didier Raoult, Natalya Yutin, and Eugene V. Koonin
Viruses with More Than 1,000 Genes: Mamavirus, a New Acanthamoeba polyphaga mimivirus Strain, and Reannotation of Mimivirus Genes

Isabelle C. Arnold, Zuzana Zigova, Matthew Holden, Trevor D. Lawley, Roland Rad, Gordon Dougan, Stanley Falkow, Stephen D. Bentley, and Anne Müller
Comparative Whole Genome Sequence Analysis of the Carcinogenic Bacterial Model Pathogen Helicobacter felis

Letters

Sankar Subramanian and David M. Lambert
Time Dependency of Molecular Evolutionary Rates? Yes and No

Sébastien Halary, Shehre-Banoo Malik, Claudio H. Slamovits, Levannia Lildhar, Mohamed Hijri, and Nicolas Corradi
Conserved Meiotic Machinery in Glomus spp., a Putatively Ancient Asexual Fungal Lineage

Lin Xu, Huifeng Jiang, Hong Chen, and Zhenglong Gu
Genetic Architecture of Growth Traits Revealed by Global Epistatic Interactions

Guang-Zhong Wang, Wei-Hua Chen, and Martin J. Lercher
Coexpression of Linked Gene Pairs Persists Long after Their Separation

Dong-Dong Wu, David M. Irwin, and Ya-Ping Zhang
Correlated Evolution among Six Gene Families in Drosophila Revealed by Parallel Change of Gene Numbers

Nick Lane
Plastids, Genomes, and the Probability of Gene Transfer

David Roy Smith, Kate Crosby, and Robert W. Lee
Correlation between Nuclear Plastid DNA Abundance and Plastid Number Supports the Limited Transfer Window Hypothesis

Luděk Kořený and Miroslav Oborník
Sequence Evidence for the Presence of Two Tetrapyrrole Pathways in Euglena gracilis

Graeme J. Roch and Nancy M. Sherwood
Stanniocalcin Has Deep Evolutionary Roots in Eukaryotes

Beatriz Vicoso and Doris Bachtrog
Lack of Global Dosage Compensation in Schistosoma mansoni, a Female-Heterogametic Parasite

Allison M. Churcher and John S. Taylor
The Antiquity of Chordate Odorant Receptors Is Revealed by the Discovery of Orthologs in the Cnidarian Nematostella vectensis

Gregory A. Babbitt and C. R. Cotter
Functional Conservation of Nucleosome Formation Selectively Biases Presumably Neutral Molecular Variation in Yeast Genomes

Editorials

John M. Archibald
Treasurer's Report for FY 2009

Society for Molecular Biology and Evolution (SMBE) Council and Business Meetings, 2010, Lyon, France

Bill Martin and Takashi Gojobori
GBE Editor's Report

Editorial Board

Genome Biology and Evolution



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Euphytica - 178 (1-3), 2011

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Euphytica - 178 (1), 2011



Contents:

Review

Resistance to rice sheath blight (Rhizoctonia solani Kühn) [(teleomorph: Thanatephorus cucumeris (A.B. Frank) Donk.] disease: current status and perspectives

Srinivasachary, Laetitia Willocquet and Serge Savary


Responses to selection of S5 inbreds for broad-based resistance to ear rots and grain mycotoxin contamination caused by Fusarium spp. in maize

D. A. Presello, A. O. Pereyra, J. Iglesias, C. M. Fauguel and D. A. Sampietro, et al.


Molecular diversity and association mapping of quantitative traits in Tibetan wild and worldwide originated barley (Hordeum vulgare L.) germplasm

Dongfa Sun, Wenbin Ren, Genlou Sun and Junhua Peng


Specific resistance to leaf rust expressed at the seedling stage in cultivars grown in France from 1983 to 2007

Henriette Goyeau and Christian Lannou


Sub-arm location of prolamin and EST-SSR loci on chromosome 1Hch from Hordeum chilense

Salim Cherif-Mouaki, Mahmoud Said, Juan B. Alvarez and Adoración Cabrera


Heterosis, molecular diversity, combining ability and their interrelationships in short duration maize (Zea mays L.) across the environments

Pooja Devi and N. K. Singh


Rapid and high-precision marker assisted backcrossing to introgress the SUB1 QTL into BR11, the rainfed lowland rice mega variety of Bangladesh

K. M. Iftekharuddaula, M. A. Newaz, M. A. Salam, H. U. Ahmed and M. A. A. Mahbub, et al.


Genetic distance and hybrid value in tropical maize under P stress and non stress conditions in acid soils

M. L. C. George, F. Salazar, M. Warburton, L. Narro and F. A. Vallejo


Pyramiding of two bacterial blight resistance and a semidwarfing gene in Type 3 Basmati using marker-assisted selection

Deepak Rajpurohit, Rahul Kumar, Mankesh Kumar, Priyanka Paul and Anjali Awasthi, et al.


Identification of QTLs for maize seed vigor at three stages of seed maturity using a RIL population

Liu Jing-bao, Fu Zhi-yuan, Xie Hui-ling, Hu Yan-min and Liu Zong-hua, et al.


Participatory selection assisted by DNA markers for enhanced drought resistance and productivity in rice (Oryza sativa L.)

A. Kanbar and H. E. Shashidhar


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Euphytica - 178 (2), 2011



Contents:

Review

Agronomic and molecular characterization of gamma ray induced banana (Musa sp.) mutants using a multivariate statistical algorithm

Rosa Karla Nogueira Pestanana, Edson Perito Amorim, Cláudia Fortes Ferreira, Vanusia Batista de Oliveira Amorim and Larissa Santos Oliveira, et al.


Construction of a crop—wild hybrid population for broadening genetic diversity in cultivated sunflower and first evaluation of its combining ability: the concept of neodomestication

Hamidreza Nooryazdan, Hervé Serieys, Jacques David, Roberto Bacilieri and André J. Bervillé


Bayesian threshold analysis of breeding values, genetic correlation and heritability of flowering intensity in Eucalyptus cladocalyx under arid conditions

Camila Cané-Retamales, Freddy Mora, Felipe Vargas-Reeve, Sandra Perret and Rodrigo Contreras-Soto


Mating systems in tropical forages: Stylosanthes capitata Vog. and Stylosanthes guianensis (Aubl.) Sw.

Melissa de Oliveira Santos-Garcia, Rosângela Maria Simeao Resende, Lucimara Chiari, Maria Imaculada Zucchi and Anete Pereira de Souza


Overcoming pre-fertilization barriers in the wide cross between Chrysanthemumgrandiflorum (Ramat.) Kitamura and C. nankingense (Nakai) Tzvel. by using special pollination techniques

Chun-Qing Sun, Zhi-Zhe Huang, Yan-Li Wang, Fa-Di Chen and Nian-Jun Teng, et al.


Pollen morphology as fertility predictor in hybrid tea roses

Luca Pipino, Marie-Christine Van Labeke, Andrea Mansuino, Valentina Scariot and Annalisa Giovannini, et al.


Genetic, quantitative and microscopic evidence for fusion of haploid nuclei and growth of somatic calli in cultured ms1035 tomato anthers

Patricia Corral-Martínez, Fernando Nuez and José M. Seguí-Simarro


Molecular markers assist in the development of diverse inbred backcross lines in European Long cucumber (Cucumis sativus L.)

Isabelle Y. Delannay and Jack E. Staub


Genetic variability of seed-quality traits in gamma-induced mutants of sunflower (Helianthus annuus L.) under water-stressed condition

P. Haddadi, B. Yazdi-samadi, M. Berger, M. R. Naghavi and A. Calmon, et al.


Marker-assisted backcross selection in an interspecific Cucumis population broadens the genetic base of cucumber (Cucumis sativus L.)

Tusar K. Behera, Jack E. Staub, Snigdha Behera, Isabelle Y. Delannay and Jin Feng Chen


Parental effects on the performance of cultivated × wild species hybrids in potato

Shelley Jansky


Development of tomato SSR markers from anchored BAC clones of chromosome 12 and their application for genetic diversity analysis and linkage mapping

Subramaniam Geethanjali, Palchamy Kadirvel, Robert de la Pena, Eguru Sreenivasa Rao and Jaw-Fen Wang


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Euphytica - 178 (3), 2011



Contents:

Quantitative trait loci controlling rice seed germination under salt stress

Zhoufei Wang, Jianfei Wang, Yongmei Bao, Yunyu Wu and Hongsheng Zhang


Heritability and predicted selection response of yield components and fibre properties in an inter-specific derived RIL population of cotton

Shiming Liu, Danny J. Llewellyn, Warwick N. Stiller, John Jacobs and Jean-Marc Lacape, et al.


Quantitative trait loci for temperature-sensitive resistance to Puccinia striiformis f. sp. tritici in wheat cultivar Flinor

J. Feng, L. L. Zuo, Z. Y. Zhang, R. M. Lin and Y. Y. Cao, et al.


Quantitative trait loci associated with seed set under high temperature stress at the flowering stage in rice (Oryza sativa L.)

Yinghui Xiao, Yi Pan, Lihua Luo, Guilian Zhang and Huabing Deng, et al.


Drought tolerance variability in S1 pollinator lines developed from a sugar beet open population

M. Ahmadi, E. Majidi Heravan, S. Y. Sadeghian, M. Mesbah and F. Darvish


Characterization of resistance gene analogs from Gossypium arboreum and their evolutionary relationships with homologs from tetraploid cottons

Muhammad Tehseen Azhar, Imran Amin, Aftab Bashir and Shahid Mansoor


Enhancement of salt tolerance in alfalfa transformed with the gene encoding for betaine aldehyde dehydrogenase

Zi-Hui Liu, Hong-Mei Zhang, Guo-Liang Li, Xiu-Lin Guo and Shou-Yi Chen, et al.


Could EST-based markers be used for the marker-assisted selection of drought tolerant barley (Hordeum vulgare) lines?

Fruzsina Szira, Andreas Börner, Kerstin Neumann, Khalil Zaynali Nezhad and Gábor Galiba, et al.


Investigation of pollen competition between wild and cultivated sorghums (Sorghum bicolor (L.) Moench) using simple sequence repeats markers

Moses M. Muraya, Hartwig H. Geiger, Santie de Villiers, Fabrice Sagnard and Ben M. Kanyenji, et al.


Seedling salt tolerance in tomato

Junming Li, Lei Liu, Yuling Bai, Pujuan Zhang and Richard Finkers, et al.


Patterns of meiosis in ABDR amphihaploids depend on the specific type of univalent chromosome division

O. G. Silkova, A. I. Shchapova and V. K. Shumny


Quantitative trait loci for seed dormancy in rice

Wei Li, Lei Xu, Xufeng Bai and Yongzhong Xing


Evaluation of seedling cold tolerance in rice cultivars: a comparison of visual ratings and quantitative indicators of physiological changes

Sang-Ic Kim and Thomas H. Tai



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Pakistan Journal of Botany - 42 (6), 2010

Contents:


1. Pollen morphology of selected Polygonum L., species (Polygonaceae) from Pakistan and its taxonomic significance
Ghazalah Yasmin, Mir Ajab Khan and Nighat Shaheen

2. Pharmacognostic studies on fresh mature leaves of Holoptelea integrifolia (Roxb) Planch
Shaukat Mahmud, Huma Shareef, Maryam Ahmad, Shahnaz Gouhar and Ghazala H. Rizwani

3. New spread of dwarf mistletoe (Arceuthobium oxycedri) in Juniper forests, Ziarat, Balochistan, Pakistan
Atta Mohammad Sarangzai, Nasrullah Khan, Muhammad Wahab and Asmatullah Kakar

4. Fruit characterization of Pakistani dates
Ghulam Sarwar Markhand, Adel A. Abul-Soad, Ameer Ahmed Mirbahar and Nisar Ahmed Kanhar

5. The first anatomical report and morphological reexamination of Psilotum nudum L., in Iran
Hassan Nazarian, Razieh Taghavizad and Esmaeil Khosravi

6. Morphological, chemical and indumentum characteristics of Rhododendron luteum Sweet (Ericaceae)
Sevim Alan, Mine Kürkçüoglu, Fatih Göger and K. Hüsnü Can Başer

7. Germination of some important weeds influenced by red light and nitrogenous compounds
Dong-Sheng Tang, Muhammad Hamayun, Abdul Latif Khan, Zabta Khan Shinwari, Yoon-Ha Kim, Sang-Mo Kang, Joon-Hee Lee, Chae-In Na, Yasmin Nawaz, Kee-Kyung Kang and In-Jung Lee

8. Ethnobotanical study of wound healing herbs among the tribal communities in northern Himalaya ranges, district Abbottabad, Pakistan
Arshad Mehmood Abbasi, Mir Ajab Khan, Mushtaq Ahmad, Rahmatullah Qureshi, Muhammad Arshad, Sarwat Jahan, Muhammad Zafar and Shazia Sultana

9. The genetic diversity of the mangrove Kandelia obovata in China revealed by ISSR analysis
Shao-Bo Chen, Wen-Yong Ding, Jian-Biao Qiu, Guang-Yin Wang, Zhi-Min Zhou, Jiao-Fei Chen, Wei-Ming Ai, Cheng-Yi Wang and Qi-Lang Xie

10. Screening of mutated population of sugarcane through RAPD
Sajida Bibi, Imtiaz Ahmed Khan, Abdullah Khatri, Shafqat Yasmin, Nighat Seema, Shahid Afghan and M.A. Arain

11. Genetic diversity in some Tunisian barley landraces based on RAPD markers
Raoudha Abdellaoui, Karim Kadri, M’barek Ben Naceur and Leila Bettaib Ben Kaab

12. Genotype independent In vitro regeneration system in elite varieties of sugarcane
Safdar Ali, Javed Iqbal and Muhammad Sarwar Khan

13. Genetic variation for seed protein in barley germplasm
Zaheer Ahmad and Shaheena Yasmin

14. Correlation analysis of seed cotton yield with some quantitative traits in upland cotton (Gossypium hirsutum L.)
Shazia Salahuddin, Saifullah Abro, A. Rehman and Khalid Iqbal

15. Evaluation of high yielding canola type Brassica genotypes/mutants for drought tolerance using physiological indices as screening tool
Muhammad Ali Khan, M.Y. Ashraf, S.M. Mujtaba, M.U. Shirazi, M.A. Khan, A. Shereen, S. Mumtaz, M. Aqil Siddiqui and G. Murtaza Kaleri

16. Direct plant regeneration from leaves of Prunus rootstock GF-677 (Prunus amygdalus xP. persica)
Syed Zia-ul-Hasan, Touqeer Ahmad, Ishfaq Ahmad Hafiz and Azhar Hussain

17. Density and planting date influence phenological development assimilate partitioning and dry matter production of faba bean
Shad K. Khalil, A. Wahab, A. Rehman, Fida Muhammad, S. Wahab, A.Z. Khan, M. Zubair, Mir Kalan Shah, I.H. Khalil and R. Amin

18. Characterization of breeding lines of common bean as revealed by RAPD and relationship with morphological traits
Atilla Dursun, Kamil Haliloglu and Melek Ekinci

19. Cloning and prokaryotic expression of a complementary DNA gene for Cyclophilin from Camellia oleifera
Xiaofeng Tan, Baoming Wang, Lin Zhang, Mingwang Shi, Lushan Xie and Fangming Hu

20. Germination and early growth response of Glycine max varieties in textile and paper industry effluents
Imrana Yousaf, Syeda Maria Ali and Azra Yasmin

21. Agronomic, fiber and seed quality traits of naturally coloured cottons in east Mediterranean region of Turkey
Lale Efe, A. Sefer Mustafayev and Fatih Killi

22. Inter-species testing of Brassica microsatellites available in public domain and their potential utilization for comparative genomics in Cruciferae
Munazza Sadia, Malik Ashiq Rabbani, M. Shahid Masood, S.R. Pearce and Salman A. Malik

23. Selection of drought tolerant and high water use efficient rice cultivars through 13C isotope discrimination technique
J. Akhter, P. Monneveux, S.A. Sabir, M.Y. Ashraf, Z. Lateef and R. Serraj

24. Multi-environment response in seed yield of soybean [Glycine max (L.) Merrill.], genotypes through GGE Biplot technique
Muhammad Ashraf, Zafar Iqbal, Muhammad Arshad and Abdul Waheed

25. Impact of plant populations and nitrogen levels on maize
Muhammad Arif, Mohammad Tariq Jan, Naqib Ullah Khan, Habib Akbar, Shad Ali Khan, M.J. Khan, Ahmad Khan, Iqbal Munir, Muhammad Saeed and Aqib Iqbal

26. Genetic variability, trait association and path analysis of yield and yield components in mungbean (Vigna radiate (L.) Wilczek)
Aqsa Tabasum, Muhammad Saleem and Irum Aziz

27. Callogenesis and organogenesis in three cultivars of Brassica juncea affected by explant source
Raisa Bano, Mohammad Haroon Khan, Hamid Rashid, Raham Sher Khan, Iqbal Munir, Zahoor Ahmed Swati and Zubeda Chaudhry

28. Evaluation of potassium status of rams: The use of pasture and blood plasma as indicators under semi-arid environmental conditions in Punjab, Pakistan
Zafar Iqbal Khan, Kafeel Ahmad, Muhammad Ashraf, Syed Ali Hassan Naqvi, Shahneela Kashaf, Abid Ejaz and Ehsan Elahi Valeem

29. Selection criterion to assess wheat boron tolerance at seedling stage: Primary vs. total root length
Milka Brdar-Jokanović, Ivana Maksimović, Emilija Nikolić-Đorić, Marija Kraljević-Balalić and Borislav Kobiljski

30. Assessment of genetic diversity and germination pattern in selected cotton genotypes of Pakistan
Abdul Samad Mumtaz, Muhammad Naveed and Zabta Khan Shinwari

31. Primary callus induction, somatic embryogenesis and regeneration studies in selected elite wheat varieties from Pakistan
Mehmooda Munazir, Rahmatullah Qureshi, Ghulam Muhammad Ali, Umer Rashid, Sabahat Noor, Khalid Mehmood, Shoukat Ali and Muhammad Arshad

32. A preliminary study on climate change causing decline in forest cover area in district Chakwal, Pakistan
Sheikh Saeed Ahmad, Anusha Sherazi and Muhammad Tahir Ali Shah

33. Impact of two medicinal plant extracts on glutathione S-transferase activity in the body tissues of Spodoptera exigua (Lepidoptera: Noctuidae)
Muhammad Rizwan-ul-Haq, Mei Ying Hu, Muhammad Afzal, Muhammad Hamid Bashir, Liang Gong and Jianjun Luo

34. Photosynthetic characteristics and water use efficiency of sweet sorghum under different watering regimes
Xie Tingting, Su Peixi and Shan Lishan

35. Quantification of various metals and cytotoxic profile of aerial parts of Polygonatum verticillatum
Muhammad Saeed, Haroon Khan, Murad Ali Khan, Faridullah Khan, Saeed Ahmad Khan and Naveed Muhammad

36. Constitutive expression of osc3h33, OSC3H50 and OSC3H37 genes in rice under salt stress
Muhammad Jamil, Waqas Iqbal, Asia Bangash, Shafiq-ur-Rehman, Q. Muhammad Imran and Eui Shik Rha

37. Tillage and seed rates effect on weed biomass, grain and biological yield of dryland chickpea
Amanullah Jan, Ihsanullah Daur, Khalid Ali and Ijaz Ahmad Khan

38. Potential of sunflower (Helianthus annuus L.) for phytoremediation of nickle (Ni) and lead (Pb) contaminated water
Saima Mukhtar, Haq Nawaz Bhatti, Muhammad Khalid, M. Anwar-ul-Haq and Sher Muhammad Shahzad

39. Floral morphs and mode of pollination in Oxalis corniculata L. from Pakistan
Rubina Abid

40. Influence of temperature and osmotic stress on germination induction of different castor bean cultivars
Nasir Mahmood Cheema, M. Azim Malik, Ghulam Qadir, M. Zubair Rafique and Nazakat Nawaz

41. Improvement in yield and nutrient uptake by co-cropping of wheat and chickpea
M. Akhtar, M. Yaqub, Z. Iqbal, M.Y. Ashraf, J. Akhter and F. Hussain

42. Levels and time of phosphorus application influence growth, dry matter partitioning and harvest index in maize
Amanullah, Muhammad Zakirullah, Muhammad Tariq, Khalid Nawab, Amir Zaman Khan, Farhatullah, Zahir Shah, Amanullah Jan, Shad Khan Khalil, Muhammad Tariq Jan, M. Sajid, Zahid Hussain and Hidyat-ur-Rahman

43. Biological screening of Zizyphus oxyphylla Edgew leaves
Muhammad Nisar, Waqar Ahmad Kaleem, Mughal Qayum, Abrar Hussain, M. Zia-ul-Haq, Ihsan Ali and M.I. Choudhary

44. Enhancement in seed germinability of rice (Oryza sativa L.) by pre-sowing seed treatment with nitric oxide (NO) under salt stress
Noman Habib, Muhammad Ashraf and Muhammad Sajid Aqeel Ahmad

45. Response of wheat to different doses of ZnSO4 under Thal desert environment
Ghulam Abbas, Gul Hassan, Muhammad Anjum Ali, Muhammad Aslam and Zafar Abbas

46. RAPID in vitro multiplication of Acacia nilotica subsp. hemispherica, a critically endangered endemic taxon
Haider Abbas, Muhammad Qaiser and Beena Naqvi

47. Impact of nitrogen levels and application methods on agronomic, physiological and nutrient uptake traits of maize fodder
S.W. Hassan, F.C. Oad, S.D. Tunio, A.W. Gandahi, M.H. Siddiqui, S.M. Oad and A.W. Jagirani

48. Yield of synthetic-derived bread wheat under varying moisture regimes
Fida Mohammad, O.S. Abdalla, S. Rajaram, Ala’a Yaljarouka, Shad K. Khalil, Naqib Ullah Khan, Iftikhar Hussain Khalil and Ijaz Ahmad

49. Effect of salinity on yield and ion accumulation of wheat genotypes
Mohammad Shafi, Jehan Bakht, Mohammad Javed Khan, Mohammad Aman Khan and Shazma Anwar

50. Effect of various priming sources on yield and yield components of maize cultivars
Jehan Bakht, Rahmat Shah, Mohammad Shafi and Mohammad Aman Khan

51. Rooting and shoot growth of stem cuttings of saltcedar (Tamarix chinensis Lour) under salt stress
Weiqiang Li, M. Ajmal Khan, Xiumei Zhang and Xiaojing Liu

52. Management of saline sodic soils through cultural practices and gypsum
Muhammad Jamal Khan, Mohammad Tariq Jan, Amin Ullah Khan, Mohammad Arif and Mohammad Shafi

53. Confidence limits for Chlorophycean members recorded from fresh waters of district Swat N.W.F.P. Pakistan
Asghar Ali, Zabta Khan Shinwari and Fazli Malik Sarim

54. Anatomical studies on Lobophora variegata (Phaeophycota) from the coast of Pakistan
Alia Abbas and Mustafa Shameel

55. Elemental composition in various thallus parts of three brown seaweeds from Karachi coast
Muhammad Afzal Rizvi and Mustafa Shameel

56. Effect of bacterial culture density and acetosyringone concentration on Agrobacterium mediated transformation in wheat
Hamid Rashid, Asma Afzal, M. Haroon Khan, Zubeda Chaudhry and Salman A. Malik

57. Isolation, purification, characterization and identification of virulence factors of Pseudomonas syringae pv. sesami and Xanthomonas campestris pv. sesame
Syeda Sadiqa Firdous, R. Asghar, M.I. Haque, Syed Nadeem Afzal, G. Murtaza and S.M. Mughal

58. Efficacy of food grade lactic acid produced through bacterial fermentation
Zulfiqar Ali, Faqir Muhammad Anjum, Saeed Akhtar, Tahir Zahoor and Muhammad Riaz

59. Compatibility of entomopathogenic fungi, Metarhizium anisopliae and Paecilomyces fumosoroseus with selective insecticides
Muhammad Ramzan Asi, Muhammad Hamid Bashir, Muhammad Afzal, Muhammad Ashfaq and Shahbaz Talib Sahi

60. Arbuscular mycorrhizal fungi associated with tissue culture raised potato
Ghazala Nasim

61. Fruit borne mycoflora of AMLA (Phyllanthus emblica L.)
Shaista Akhund, Muhammad Suhail, Ishrat Rani, Fozia I. Memon and Hidayatullah Abro

62. Effect of different antimicrobial agents on the fiber development of in vitro cultured cotton ovules
Hafiza Masooma Naseer Cheema, Asia Khatoon, Aftab Bashir and Kauser A, Malik

63. Optimization of process parameters for the biosynthesis of cellulases by Trichoderma viride
Shazia Kanwal Malik, Hamid Mukhtar, Ammad Ahmad Farooqi and Ikram-ul-Haq

64. Profiling gene expression patterns of stripe rust (Puccinia striiformis f.sp. tritici) resistance gene in new wheat germplasm
Zeng Xingquan, Wang Changyou, M. Ali, Zhang Hong, Liu Xinlun, Li Weiyan and Ji Wanquan

65. Wheat nitrogen indices response to nitrogen source and application time
Mohammad Tariq Jan, Mohammad Jamal Khan, Ahmad Khan, Mohammad Arif, Mohammad Shafi and Farmanullah

66. Antimicrobial screening of some medicinal plants of Pakistan
Noor Jahan, Mansoor Ahmad, Mehjabeen, M. Zia-ul-Haq, S. Mehboob Alam and Mahmood Qureshi

67. Comparative studies on the lipolytic potential of wild and mutant strains of Rhizopus oligosporous var. microsporous IIB-63 isolated from lipid rich habitats
Tehreema Iftikhar and Ikram-ul-Haq

68. Evaluation of antioxidant and free radical scavenging activities of fruit extract from Zanthoxylum alatum: a commonly used spice from Pakistan
Farhat Batool, Syed Mubashir Sabir, J.B.T. Rocha, Asad Hussain Shah, Zafar Saied Saify and Syed Dilnawaz Ahmed

69. Screening of killer-sensitive-pattern (KSP) for biotyping yeast strains isolated from slime fluxes of trees and flowers’ nectar
Muhammad Mushtaq, Sharfun-Nahar and M.H. Hashmi

70. Effect of oilseed cakes alone or in combination with Trichoderma species for the control of charcoal rot of sunflower (Helianthus annuus L.)
Muhammad Anis, M. Javed Zaki and Shahnaz Dawar

71. New records of Ectomycorrhizae from Pakistan
A.R. Niazi, A.N. Khalid and S.H. Iqbal

72. Mycoflora associated with lentil (Lens culinaris L.) seeds of Pakistan
Summiaya Rahim, Shahnaz Dawar and Marium Tariq

73. Influence of garlic root exudates on cyto-morphological alteration of the hyphae of Phytophthora capsici, the cause of Phytophthora blight in pepper
Muhammad Azam Khan and Cheng Zhihui

74. Effect of diazotrophs (Rhizobium and Azotobacter) on growth of maize (Zea mays L.) and accumulation of lead (pb) in different plant parts
Fazal Hadi and Asghari Bano

75. Seasonal variation and distribution of Euglenophycota in the Punjab
Syed Tariq-Ali, A. Zarina and Mustafa Shameel

76. Identification of essential oils from the leaves of 11 species of Eriobotrya
Yanping Hong, Suhua Huang, Jincheng Wu and Shunquan Lin

77. New fungal records on Eucalyptus species from district Faisalabad, Pakistan, II.
Syed Qaiser Abbas, Tehreema Iftikhar, Mubashir Niaz, Naila Sadaf and Alia Abbas

78. Factor analysis in sunflower (Helianthus annuus L.) to investigate desirable hybrids
M. Arshad, M. Ayub Khan, S.A. Jadoon and Akbar S. Mohmand



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PLANT - FAMILY - FLOWER - GENERA - JOURNAL - ARTICOLO - PLANTS - PIANTE - BOTANIQUE - ROŚLINY - SINONIM - FAMIGLIA - BOTANY - NAUKA - SINONIMO - BOTANICA - WYCIECZKA - TRAVEL - SINÓNIMO - FRUIT - ARTICOLO - SYNONIEM - CZASOPISMO - SYNONYM - SYNONYME - SYSTEMATIC - SYSTEMATYKA - SZINONIMA - SYSTEMATYKA - RODZINA - ARTYKUŁ - ARTICLE - FLOWER - KWIATY - OWOC - SEEDS - NASIONA - CULTIVATION - USE - WATERING - PROPAGATION - PESTSM - DISEASES - FERTILIZATION - HOUSE - GARDEN - BOWL - KWITNIENIE - FLOWERBED - SOIL - POND - MARSH - SPECIES - HYBRIDS - VEGETABLE GARDEN - UPRAWA - ZASTOSOWANIE - PODLEWANIE - ROZMNAŻANIE - SZKODNIKI - CHOROBY - NAWOŻENIE - ROŚLINY DOMOWE - ROŚLINY BALKONOWE - ROŚLINY TARASOWE - OGRÓD - POJEMNIK - SUBSTRAT - PODŁOŻE - KERAMZYT - GLINA - TORF - DONICA - DONICZKA - ZIEMIA - RABATA - GLEBA - ROŚLINY WODNE - STAW - WODA - ROŚLINY BAGIENNE - OWOCE - WARZYWA - SPRZEDAŻ ROŚLIN - GATUNKI - MIESZAŃCE - CV - KULTYWARY

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POLITYKA I NIE TYLKO , PRZEPISY KULINARNE , ULUBIONE KSIĄŻKI , DOWCIPY , GEOGRAFIA , ŚWIEBODZICE , FORUM O RODZAJU HOYA , PEUGEOT , TWOJE CENTRUM FINANSOWE , PiS , PLATFORMA OBYWATELSKA

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New Phytologist - 188 (2), 2010

Contents:

Pollinator-mediated selection and floral evolution: from pollination ecology to macroevolution
Sapir, Yuval; Scott Armbruster, W.

The invasion of the land by plants: when and where?
Wellman, Charles H.

Tracing photosynthetic isotope discrimination from leaves to soil
Subke, Jens-Arne; Ineson, Phil

The population genomics of plant adaptation
Siol, Mathieu; Wright, Stephen I.; Barrett, Spencer C. H.

Seed dispersal effectiveness revisited: a conceptual review
Schupp, Eugene W.; Jordano, Pedro; Gómez, José María

Using phylogenetics to detect pollinator-mediated floral evolution
Smith, Stacey DeWitt

Early Middle Ordovician evidence for land plants in Argentina (eastern Gondwana)
Rubinstein, C. V.; Gerrienne, P.; de la Puente, G. S.; Astini, R. A.; Steemans, P.

Direct selection at the blossom level on floral reward by pollinators in a natural population of Dalechampia schottii: full-disclosure honesty?
Bolstad, Geir H.; Armbruster, W. Scott; Pélabon, Christophe; Pérez-Barrales, Rocío; Hansen, Thomas F.

Pollinator-mediated selection on floral display, spur length and flowering phenology in the deceptive orchid Dactylorhiza lapponica
Sletvold, Nina; Grindeland, John M.; Agren, Jon

Pollinators exert natural selection on flower size and floral display in Penstemon digitalis
Parachnowitsch, Amy L.; Kessler, André

Evolutionary breakdown of pollination specialization in a Caribbean plant radiation
Martén-Rodríguez, Silvana; Fenster, Charles B.; Agnarsson, Ingi; Skog, Laurence E.; Zimmer, Elizabeth A.

Trait correlates and functional significance of heteranthery in flowering plants
Vallejo-Marín, Mario; Da Silva, Elizabeth M.; Sargent, Risa D.; Barrett, Spencer C. H.

Pollinator behaviour and plant speciation: can assortative mating and disruptive selection maintain distinct floral morphs in sympatry?
Rymer, Paul D.; Johnson, Steven D.; Savolainen, Vincent

Pollinator specificity, floral odour chemistry and the phylogeny of Australian sexually deceptive Chiloglottis orchids: implications for pollinator-driven speciation
Peakall, Rod; Ebert, Daniel; Poldy, Jacqueline; Barrow, Russell A.; Francke, Wittko; Bower, Colin C.; Schiestl, Florian P.

The role of volatile organic compounds, morphology and pigments of globeflowers in the attraction of their specific pollinating flies
Ibanez, Sébastien; Dötterl, Stefan; Anstett, Marie-Charlotte; Baudino, Sylvie; Caissard, Jean-Claude; Gallet, Christiane; Després, Laurence

Variation and fitness costs for tolerance to different types of herbivore damage in Boechera stricta genotypes with contrasting glucosinolate structures
Manzaneda, Antonio J.; Prasad, Kasavajhala V. S. K.; Mitchell-Olds, Thomas

Estimating the capability of different phytoplankton groups to adapt to contamination: herbicides will affect phytoplankton species differently
Huertas, I. E.; Rouco, M.; López-Rodas, V.; Costas, E.

Multilocus analysis of genetic divergence between outcrossing Arabidopsis species: evidence of genome-wide admixture
Wang, Wei-Kuang; Ho, Chuan-Wen; Hung, Kuo-Hsiang; Wang, Kuo-Hsiung; Huang, Chi-Chun; Araki, Hitoshi; Hwang, Chi-Chuan; Hsu, Tsai-Wen; Osada, Naoki; Chiang, Tzen-Yuh

Widespread, ecologically relevant genetic markers developed from association mapping of climate-related traits in Sitka spruce (Picea sitchensis)
Holliday, Jason A.; Ritland, Kermit; Aitken, Sally N.

Association genetics of traits controlling lignin and cellulose biosynthesis in black cottonwood (Populus trichocarpa, Salicaceae) secondary xylem
Wegrzyn, Jill L.; Eckert, Andrew J.; Choi, Minyoung; Lee, Jennifer M.; Stanton, Brian J.; Sykes, Robert; Davis, Mark F.; Tsai, Chung-Jui; Neale, David B.

Xylem function and growth rate interact to determine recovery rates after exposure to extreme water deficit
Brodribb, Tim J.; Bowman, David J. M. S.; Nichols, Scott; Delzon, Sylvain; Burlett, Regis

Coordinated variation in leaf and root traits across multiple spatial scales in Chinese semi-arid and arid ecosystems
Liu, Guofang; Freschet, Grégoire T.; Pan, Xu; Cornelissen, Johannes H. C.; Li, Yan; Dong, Ming

Wind and mechanical stimuli differentially affect leaf traits in Plantago major
Anten, Niels P. R.; Alcalá-Herrera, Rafael; Schieving, Feike; Onoda, Yusuke

Contrasting trait responses in plant communities to experimental and geographic variation in precipitation
Sandel, Brody; Goldstein, Leah J.; Kraft, Nathan J.B.; Okie, Jordan G.; Shuldman, Michal I.; Ackerly, David D.; Cleland, Elsa E.; Suding, Katharine N.

Photosynthetic carbon isotope discrimination and its relationship to the carbon isotope signals of stem, soil and ecosystem respiration
Wingate, Lisa; Ogée, Jérôme; Burlett, Régis; Bosc, Alexandre; Devaux, Marion; Grace, John; Loustau, Denis; Gessler, Arthur

15N and 13C natural abundance of two mycoheterotrophic and a putative partially mycoheterotrophic species associated with arbuscular mycorrhizal fungi
Merckx, Vincent; Stöckel, Marcus; Fleischmann, Andreas; Bruns, Thomas D.; Gebauer, Gerhard

Activation of basal defense mechanisms of rice plants by Glomus intraradices does not affect the arbuscular mycorrhizal symbiosis
Campos-Soriano, Lidia; García-Garrido, José Manuel; Segundo, Blanca San

Arabidopsis exocyst subunits SEC8 and EXO70A1 and exocyst interactor ROH1 are involved in the localized deposition of seed coat pectin
Kulich, Ivan; Cole, Rex; Drdová, Edita; Cvrčková, Fatima; Soukup, Aleš; Fowler, John; Žárský, Viktor

Salicylic acid promotes seed germination under high salinity by modulating antioxidant activity in Arabidopsis
Lee, Sangmin; Kim, Sang-Gyu; Park, Chung-Mo


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PLANT - FAMILY - FLOWER - GENERA - JOURNAL - ARTICOLO - PLANTS - PIANTE - BOTANIQUE - ROŚLINY - SINONIM - FAMIGLIA - BOTANY - NAUKA - SINONIMO - BOTANICA - WYCIECZKA - TRAVEL - SINÓNIMO - FRUIT - ARTICOLO - SYNONIEM - CZASOPISMO - SYNONYM - SYNONYME - SYSTEMATIC - SYSTEMATYKA - SZINONIMA - SYSTEMATYKA - RODZINA - ARTYKUŁ - ARTICLE - FLOWER - KWIATY - OWOC - SEEDS - NASIONA - CULTIVATION - USE - WATERING - PROPAGATION - PESTSM - DISEASES - FERTILIZATION - HOUSE - GARDEN - BOWL - KWITNIENIE - FLOWERBED - SOIL - POND - MARSH - SPECIES - HYBRIDS - VEGETABLE GARDEN - UPRAWA - ZASTOSOWANIE - PODLEWANIE - ROZMNAŻANIE - SZKODNIKI - CHOROBY - NAWOŻENIE - ROŚLINY DOMOWE - ROŚLINY BALKONOWE - ROŚLINY TARASOWE - OGRÓD - POJEMNIK - SUBSTRAT - PODŁOŻE - KERAMZYT - GLINA - TORF - DONICA - DONICZKA - ZIEMIA - RABATA - GLEBA - ROŚLINY WODNE - STAW - WODA - ROŚLINY BAGIENNE - OWOCE - WARZYWA - SPRZEDAŻ ROŚLIN - GATUNKI - MIESZAŃCE - CV - KULTYWARY

+++++++++++++++

POLITYKA I NIE TYLKO , PRZEPISY KULINARNE , ULUBIONE KSIĄŻKI , DOWCIPY , GEOGRAFIA , ŚWIEBODZICE , FORUM O RODZAJU HOYA , PEUGEOT , TWOJE CENTRUM FINANSOWE , PiS , PLATFORMA OBYWATELSKA

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Euphytica - 177 (2), 2011

Contents:



Enhancement of drought resistance and biomass by increasing the amount of glycine betaine in wheat seedlings

Chunmei He, Weiwei Zhang, Qiang Gao, Aifang Yang and Xiaorui Hu, et al.


Molecular cytogenetic identification of a new wheat-Thinopyrum substitution line with stripe rust resistance

Li-Jun Hu, Guang-Rong Li, Zi-Xian Zeng, Zhi-Jian Chang and Cheng Liu, et al.


Molecular mapping of quantitative trait loci for domestication traits and ß-glucan content in a wheat recombinant inbred line population

Alagu Manickavelu, Kanako Kawaura, Hisako Imamura, Michiko Mori and Yasunari Ogihara



Inheritance of the efficiency of nitrogen uptake and utilization in winter wheat (Triticum aestivum L.) under diverse nutrition levels

Andrzej G. Górny, Zofia Banaszak, Bogumila Ługowska and Dominika Ratajczak


Identification of microsatellite markers linked with yield components under drought stress at terminal growth stages in durum wheat

M. Golabadi, A. Arzani, S. A. M. Mirmohammadi Maibody, B. E. Sayed Tabatabaei and S. A. Mohammadi


Advanced-backcross QTL analysis in spring barley: IV. Localization of QTL × nitrogen interaction effects for yield-related traits

Bernhard Saal, Maria von Korff, Jens Léon and Klaus Pillen


Characterization of a male sterile mutant from progeny of a transgenic plant containing a leaf senescence-inhibition gene in wheat

Ya-Jun Xi, Xue-Feng Ma, Huan Zhong, Shu-Dong Liu and Zhu-Lin Wang, et al.


Realized gains from selection for spring wheat grain yield are different in conventional and organically managed systems

Todd A. Reid, Rong-Cai Yang, Donald F. Salmon, Alireza Navabi and D. Spaner


Diagnostic value of molecular markers linked to the eyespot resistance gene Pch1 in wheat

Nina Meyer, Volker Lind, Magdalena Heindorf, Viktor Korzun and Wolfgang Friedt, et al.


QTL mapping of yield-related traits in the wheat germplasm 3228

Jiansheng Wang, Weihua Liu, Hui Wang, Lihui Li and Jun Wu, et al.


Genetic mapping of the genes for non-glaucous phenotypes in tetraploid wheat

K. Yoshiya, N. Watanabe and T. Kuboyama


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plant - family - flower - genera - journal - articolo - plants - piante - botanique - rośliny - sinonim - famiglia - botany - nauka - sinonimo - botanica - wycieczka - travel - sinónimo - fruit - sinônimo - articolo - synoniem - czasopismo - synonym - synonyme - systematic - systematyka - szinonima - systematyka - rodzina - artykuł - article - flower - kwiaty - owoc - seeds - nasiona

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DOWCIPY , PEUGEOT , POLITYKA I NIE TYLKO , PRZEPISY KULINARNE , ULUBIONE KSIĄŻKI , GEOGRAFIA , ŚWIEBODZICE , FORUM O RODZAJU HOYA , ŚWIEBODZICE - FORUM

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Annals of Botany - 105 (4), 2010

Contents:

ContentSnapshots

Plant Cuttings: news in botany

Nigel Chaffey
News in Botany: Nigel Chaffey presents a round-up of plant-based items from the world's media

Book Reviews

Michael F. Fay
Micropropagation of orchids, 2 volume set, 2nd edn

Alison M.R. Ferrie
Protocols for in vitro cultures and secondary metabolite analysis of aromatic and medicinal plants

Tomokazu Koshiba
Plant Hormones. Methods and Protocols, 2nd edn

David Lawlor
Photosynthesis in silico. Understanding complexity from molecules to ecosystems

Robert van Hulst
Statistics for terri?ed biologists

BOTANICAL BRIEFING

Beverley J. Glover and Heather M. Whitney
Structural colour and iridescence in plants: the poorly studied relations of pigment colour

REVIEW

Xiao Juan Yang and Patrick M. Finnegan
Regulation of phosphate starvation responses in higher plants

ORIGINAL ARTICLES

Simon Renny-Byfield, Malika Ainouche, Ilia J. Leitch, K. Yoong Lim, Steven C. Le Comber, and Andrew R. Leitch
Flow cytometry and GISH reveal mixed ploidy populations and Spartina nonaploids with genomes of S. alterniflora and S. maritima origin

Elena Albrecht, Miguel Escobar, and Roger T. Chetelat
Genetic diversity and population structure in the tomato-like nightshades Solanum lycopersicoides and S. sitiens

Alexander Vrijdaghs, Marc Reynders, Isabel Larridon, A. Muthama Muasya, Erik Smets, and Paul Goetghebeur
Spikelet structure and development in Cyperoideae (Cyperaceae): a monopodial general model based on ontogenetic evidence

J. G. Hodgson, M. Sharafi, A. Jalili, S. Díaz, G. Montserrat-Martí, C. Palmer, B. Cerabolini, S. Pierce, B. Hamzehee, Y. Asri, Z. Jamzad, P. Wilson, J. A. Raven, S. R. Band, S. Basconcelo, A. Bogard, G. Carter, M. Charles, P. Castro-Díez, J. H. C. Cornelissen, G. Funes, G. Jones, M. Khoshnevis, N. Pérez-Harguindeguy, M. C. Pérez-Rontomé, F. A. Shirvany, F. Vendramini, S. Yazdani, R. Abbas-Azimi, S. Boustani, M. Dehghan, J. Guerrero-Campo, A. Hynd, E. Kowsary, F. Kazemi-Saeed, B. Siavash, P. Villar-Salvador, R. Craigie, A. Naqinezhad, A. Romo-Díez, L. de Torres Espuny, and E. Simmons
Stomatal vs. genome size in angiosperms: the somatic tail wagging the genomic dog?

Hai-Gang Li, Jian-Bo Shen, Fu-Suo Zhang, and Hans Lambers
Localized application of soil organic matter shifts distribution of cluster roots of white lupin in the soil profile due to localized release of phosphorus

Benjamin R. Montgomery, Deanna M. Soper, and Lynda F. Delph
Asymmetrical conspecific seed-siring advantage between Silene latifolia and S. dioica

P. É. Lauri, J. J. Kelner, C. Trottier, and E. Costes
Insights into secondary growth in perennial plants: its unequal spatial and temporal dynamics in the apple (Malus domestica) is driven by architectural position and fruit load

Micha Ofir and Jaime Kigel
Ecotypic variation of summer dormancy relaxation associated with rainfall gradient in the geophytic grass Poa bulbosa

B. Moreira, J. Tormo, E. Estrelles, and J. G. Pausas
Disentangling the role of heat and smoke as germination cues in Mediterranean Basin flora

Akira S. Hirao
Kinship between parents reduces offspring fitness in a natural population of Rhododendron brachycarpum

SHORT COMMUNICATIONS

Nicole M. Hughes, William K. Smith, and Kevin S. Gould
Red (anthocyanic) leaf margins do not correspond to increased phenolic content in New Zealand Veronica spp.

Christian Parisod and Stéphane Joost
Divergent selection in trailing- versus leading-edge populations of Biscutella laevigata


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plant - family - flower - genera - journal - articolo - plants - piante - botanique - rośliny - sinonim - famiglia - botany - nauka - sinonimo - botanica - wycieczka - travel - sinónimo - fruit - sinônimo - articolo - synoniem - czasopismo - synonym - synonyme - systematic - systematyka - szinonima - systematyka - rodzina - artykuł - article - flower - kwiaty - owoc - seeds - nasiona

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POLITYKA I NIE TYLKO , PRZEPISY KULINARNE , ULUBIONE KSIĄŻKI , DOWCIPY , GEOGRAFIA , ŚWIEBODZICE , FORUM O RODZAJU HOYA , ŚWIEBODZICE - FORUM

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African Journal of Ecology - 48 (3), 2010

Impacts of selective logging on population structure and dynamics of a canopy tree (Olea capensis) in Kakamega forest
Tsingalia, Mugatsia

Inbreeding and inbreeding depression in a threatened endemic plant, the African violet (Saintpaulia ionantha ssp. grotei), of the East Usambara Mountains, Tanzania
Kolehmainen, Johanna; Korpelainen, Helena; Mutikainen, Pia

Censusing the mountain gorillas in the Virunga Volcanoes: complete sweep method versus monitoring
Gray, Maryke; McNeilage, Alastair; Fawcett, Katie; Robbins, Martha M.; Ssebide, Benard; Mbula, Deo; Uwingeli, Prosper

Diversity, dynamics and reproduction in a community of small mammals in Upper Guinea, with emphasis on pygmy mice ecology
Fichet-Calvet, Elisabeth; Audenaert, Leen; Barriere, Patrick; Verheyen, Erik

Breeding requirements of Nahan's Francolin, Francolinus nahan, in Budongo forest reserve, Uganda
Sande, Eric; Dranzoa, Christine; Wegge, Per; Carroll, John P.

Sharing natural resources: mountain gorillas and people in the Parc National des Volcans, Rwanda
van Gils, Hein; Kayijamahe, Eugene

Prediction of Prosopis species invasion in Kenya using geographical information system techniques
Muturi, Gabriel M.; Mohren, Godefridus M. J.; Kimani, Jacob N.

Response of waterbird species to fluctuating water levels in tropical coastal wetlands
Gbogbo, Francis; Oduro, William; Oppong, Samuel Kingsley

Structure of Anogeissus leiocarpa Guill., Perr. natural stands in relation to anthropogenic pressure within Wari-Maro Forest Reserve in Benin
Assogbadjo, Achille Ephrem; Kakai, Romain Lucas Glele; Sinsin, Brice; Pelz, Dieter

Acoustic estimation of wildlife abundance: methodology for vocal mammals in forested habitats
Thompson, Mya E.; Schwager, Steven J.; Payne, Katharine B.; Turkalo, Andrea K.

Assessment of Rhodamine B for labelling the plague reservoir Rattus rattus in Madagascar
Rahelinirina, Soanandrasana; Duplantier, Jean-Marc; Ratsimba, Mamy; Ratovonjato, Jocelyn; Ramilijaona, Olga; Papillon, Yves; Rahalison, Lila

Intra-lake stable isotope ratio variation in selected fish species and their possible carbon sources in Lake Kyoga (Uganda): implications for aquatic food web studies
Mbabazi, Dismas; Makanga, B.; Orach-Meza, F.; Hecky, R. E.; Balirwa, J.S.; Ogutu-Ohwayo, R.; Verburg, P.; Chapman, L.; Muhumuza, E.

The influence of geographic and morphometric factors on the distribution of water bird species in small high altitude tropical man made reservoirs, Central Rift Valley, Kenya
Mwaura, Francis

Diversity and abundance of insect visitors to flowers of trees and shrubs in a South African savannah
Mawdsley, Jonathan R.; Sithole, Hendrik

Disturbance indicators and population decline of logged species in Mt. Elgon Forest, Kenya
Hitimana, Joseph; Kiyiapi, James; Njunge, Joseph; Bargerei, Rosemary

Conservation planning and viability: problems associated with identifying priority sites in Swaziland using species list data
Smith, Robert J.; Monadjem, Ara; Magagula, Cebisile N.; Mahlaba, Themba A.M.

Indications of higher diversity and abundance of small rodents in human-influenced Sudanian savannah than in the Niokolo Koba National Park (Senegal)
Konečný, Adam; Koubek, Petr; Bryja, Josef

Participatory wildlife surveys in communal lands: a case study from Simanjiro, Tanzania
Msoffe, Fortunata U.; Ogutu, Joseph O.; Kaaya, John; Bedelian, Claire; Said, Mohammed Y.; Kifugo, Shem C.; Reid, Robin S.; Neselle, Moses; van Gardingen, Paul; Thirgood, Simon

Preliminary investigations into a potential ant invader in Kruger National Park, South Africa
Sithole, Hendrik; Smit, Izak P.J.; Parr, Catherine L.

Variability in survival and mortality of Acacia drepanolobium Sjostedt following prescribed burning at Olpejeta Conservancy, Kenya
Wahungu, Geoffrey M.; Mureu, Lucy K.; Macharia, Paul G.

Range expansion of the globally Vulnerable Karamoja apalis Apalis karamojae in the Serengeti ecosystem
Shaw, Philip; Sinclair, A.R.E.; Metzger, Kristine; Nkwabi, Ally; Mduma, Simon A.R.; Baker, Neil

Floristic inventory and diversity assessment of a lowland African Montane Rainforest at Korup, Cameroon and implications for conservation
Mbue, Innocent Ndoh; Ge, Jiwen; Kanyamanda, Kasereka; Nowel Njamnsi, Yinkfu; Samake, Mamadou

Do Meyer's Parrots Poicephalus meyeri benefit pollination and seed dispersal of plants in the Okavango Delta, Botswana?
Boyes, Rutledge S.; Perrin, Michael R.

Seedling survival in Manilkara butugi Chiov. along a dispersal gradient in Kakamega forest, Kenya
Wahungu, Geoffery M.; Mureu, Lucy K.; Wato, Yussuf A.; Mureithi, Sarah N.; Karanja, Geoffery G.

Density dependence and population dynamics of black rhinos (Diceros bicornis michaeli) in Kenya's rhino sanctuaries
Okita-Ouma, Benson; Amin, Rajan; van Langevelde, Frank; Leader-Williams, Nigel

The use of breeding sites of Tilapia congica (Thys & van Audenaerde 1960) to delineate conservation sites in the Lake Tumba, Democratic Republic of Congo: toward the conservation of the lake ecosystem
Inogwabini, Bila-Isia; Dianda, Mputu; Lingopa, Zanga

Moist lower montane rainforest classification: a case study from Bwindi Impenetrable National Park, Uganda
Chaigneau, Tomas; Ahrends, Antje; Argent, Jennifer; Riddhiraska, Naboon; Marchant, Rob

A note on the thermal ecology and foraging behaviour of the Egyptian fruit bat, Rousettus aegyptiacus, at Mt. Elgon, Kenya
McFarlane, Donald A.; Lundberg, Joyce

Utilization of forest plant resources by the local people around Kalinzu Forest Reserve, South-Western Uganda
Aine-omucunguzi, Adalbert; Kagoro-Rugunda, Grace; Byarugaba, Dominic

When savannah encroaches on the forest: thresholds in bird-habitat associations in the Bamenda Highlands, Cameroon
Hořák, David; Sedláček, Ondřej; Reif, Jiří; Riegert, Jan; Pešata, Michal

Catch composition and seasonal distribution of the genera Penaeus and Macrobranchium in Badagry Creek, Nigeria
Akintola, Shehu L.; Olusoji-Bello, Oluayo A.; Anetekhai, Martins A.; Clarke, Edwin O.; Ajibade, Mathew A.; Kumolu-Johnson, Christopher A.

Genetic differentiation in an arboreal rodent from African savannas
Meyer, Jork; Kohnen, Annette; Brandl, Roland

The population status of the Kafue Lechwe in the Kafue Flats, Zambia
Chansa, Wilbroad; Kampamba, George

Structuring of genetic diversity in Albizia gummifera C.A.Sm. among some East African and Madagascan populations
Nantongo, Judith Ssali; Lamoris Okullo, John Bosco; Eilu, Gerald; Ratsimiala Ramonta, Isabelle; Odee, David; Cavers, Stephen

Survey of fungi on some red and white mangrove forest trees in Rivers State, Nigeria
Ukoima, N.H.; Amakiri, M.A.; Adeniji, M.O.; Daniel-Kalio, L.A.

Single black-backed jackal (Canis mesomelas) kills adult impala (Aepyceros melampus)
Kamler, Jan F.; Foght, James L.; Collins, Kai

New observations of the terrestrial holoparasite Chlamydophytum aphyllum Mildbr. and its consumption by bonobos at Kokolopori, Democratic Republic of Congo
Georgiev, Alexander V.; Lokasola, Albert L.; Nkanga, Leonard; Lokondja, Antoine; Nsala, Jean; Likenge, Jacques; Ilanga-Bomanga, Antoine; Likenge, Jean-Pierre



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plant - family - flower - genera - journal - articolo - plants - piante - botanique - rośliny - sinonim - famiglia - botany - nauka - sinonimo - botanica - wycieczka - travel - sinónimo - fruit - sinônimo - articolo - synoniem - czasopismo - synonym - synonyme - systematic - systematyka - szinonima - systematyka - rodzina - artykuł - article - flower - kwiaty - owoc - seeds - nasiona

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POLITYKA I NIE TYLKO , PRZEPISY KULINARNE , ULUBIONE KSIĄŻKI , DOWCIPY , GEOGRAFIA , ŚWIEBODZICE , FORUM O RODZAJU HOYA , ŚWIEBODZICE - FORUM

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Plant Breeding - 129 (1), 2010

Contents:


ORIGINAL ARTICLES


Linear variance models for plant breeding trials (pages 1–8)

H. P. Piepho and E. R. Williams


Molecular mapping of a fertility restorer gene for cytoplasmic male sterility in soybean (pages 9–12)

Y. Wang, L. Zhao, X. Wang and H. Sun


Stability of the cleistogamous trait during the flowering period of oilseed rape (pages 13–18)

M. Leflon, A. Hüsken, C. Njontie, S. Kightley, D. Pendergrast, J. Pierre, M. Renard and X. Pinochet


Morphological and cytological study in a new type of cytoplasmic male-sterile line CMS-GIG2 in sunflower (Helianthus annuus) (pages 19–23)

J. Zhang, L. Wang, A. Zhao, H. Liu, C.-C. Jan, D. Qi and G. Liu


Genetic mapping for the Rf1 (fertility restoration) gene in sunflower (Helianthus annuus L.) by SSR and TRAP markers (pages 24–28)

B. Yue, B. A. Vick, X. Cai and J. Hu


Identification of quantitative trait loci for seed traits and floral morphology in a field-grown Lolium perenne × Lolium multiflorum mapping population (pages 29–34)

R. N. Brown, R. E. Barker, S. E. Warnke, L. D. Cooper, L. A. Brilman, M. A. Rouf Mian, G. Jung and S.-C. Sim


A codominant SCAR marker linked to the genic male sterility gene (ms1) in chili pepper (Capsicum annuum) (pages 35–38)

J. Lee, J. B. Yoon, J.-H. Han, W. P. Lee, J. W. Do, H. Ryu, S. H. Kim and H. G. Park


Improvement of Sclerotinia resistance of a Polima CMS restorer line of rapeseed via phenotypic selection, marker-assisted background selection and microspore culture (pages 39–44)

B. Yu, P. Liu, D. Hong, Q. He and G. Yang


Screening the Spanish Barley Core Collection for disease resistance (pages 45–52)

C. Silvar, A. M. Casas, D. Kopahnke, A. Habekuß, G. Schweizer, M. P. Gracia, J. M. Lasa, F. J. Ciudad, J. L. Molina-Cano, E. Igartua and F. Ordon


Identification and molecular tagging of a stripe rust resistance gene in wheat line P81 (pages 53–57)

Z. J. Pu, G. Y. Chen, Y. M. Wei, W. Y. Yang, Z. H. Yan and Y. L. Zheng


Genetic variation of winter rye cultivars for their ergot (Claviceps purpurea) reaction tested in a field design with minimized interplot interference (pages 58–62)

T. Miedaner, V. Mirdita, B. Rodemann, T. Drobeck and D. Rentel


QTL analysis for the resistance to small brown planthopper (Laodelphax striatellus Fallén) in rice using backcross inbred lines (pages 63–67)

C. X. Duan, N. Su, Z. J. Cheng, C. L. Lei, J. L. Wang, H. Q. Zhai and J. M. Wan


Molecular diversity and association of SSR markers to rust and late leaf spot resistance in cultivated groundnut (Arachis hypogaea L.) (pages 68–71)

S. Mondal and A. M. Badigannavar


Inheritance of resistance to races 1, 2 and 5 of powdery mildew in the melon TGR-1551 (pages 72–75)

F. J. Yuste-Lisbona, A. I. López-Sesé and M. L. Gómez-Guillamón


Transfer of tolerance to different Potato virus Y (PVY) isolates from Nicotiana africana Merxm. to Nicotiana tabacum L. (pages 76–81)

T. Doroszewska


Genetic variation for saturated fatty acid content in a collection of European winter oilseed rape material (Brassica napus) (pages 82–86)

Z. Dimov and C. Möllers


Gibberellin-induced mesocotyl elongation in deep-sowing tolerant maize inbred line 3681-4 (pages 87–91)

G. Zhao, J. Fu, G. Wang, P. Ma, L. Wu and J. Wang


Genotypic effects on field performance of maize plants carrying the allele sugary1 (pages 92–95)

P. Revilla, R. A. Malvar, B. Ordás, V. M. Rodríguez and A. Ordás


Tissue culture-induced morphological somaclonal variation in St. Augustinegrass [Stenotaphrum secundatum (Walt.) Kuntze] (pages 96–99)

R. Li, A. H. Bruneau and R. Qu


Carotenoid composition and changes in expression of carotenoid biosynthetic genes in tepals of Asiatic hybrid lily (pages 100–107)

M. Yamagishi, S. Kishimoto and M. Nakayama


SHORT COMMUNICATIONS


Prediction of heterosis for grain yield in rice using ‘key’ informative EST-SSR markers (pages 108–111)

I. Jaikishan, P. Rajendrakumar, M. S. Ramesha, B. C. Viraktamath, S. M. Balachandran, C. N. Neeraja, K. Sujatha, K. Srinivasa Rao, P. Natarajkumar, Y. Hari, K. Sakthivel, A. S. Ramaprasad and R. M. Sundaram


Genetic linkage map of cassava (Manihot esculenta Crantz) based on AFLP and SSR markers (pages 112–115)

S. Kunkeaw, S. Tangphatsornruang, D. R. Smith and K. Triwitayakorn


Mutagenic induction of double-podding trait in different genotypes of chickpea and their characterization by STMS marker (pages 116–119)

H. Ali, T. M. Shah, N. Iqbal, B. M. Atta and M. A. Haq


Isolation and characterization of microsatellite markers from guineagrass (Panicum maximum) for genetic diversity estimate and cross-species amplification (pages 120–124)

A. Chandra and K. K. Tiwari

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family - flower - genera - plants - piante - rośliny - sinonim - sinonimo - sinónimo - sinônimo - synoniem - synonym - synonyme - systematic - szinonima - systematyka - rodzina - artykuł - article - flower - kwiaty - owoc - seeds - nasiona

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POLITYKA I NIE TYLKO , PRZEPISY KULINARNE , ULUBIONE KSIĄŻKI , DOWCIPY , GEOGRAFIA , ŚWIEBODZICE , FORUM O RODZAJU HOYA

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New Phytologist - 187 (4), 2010

[Volume 187, Number 4, September 2010 ]

Spis treści:

Parlez-vous effectors?
Martin, Francis

Mining for nutrients - regulatory aspects of cluster root function and development
Neumann, Günter

The right stuff: evidence for an `optimal' genome size in a wild grass population
Beaulieu, Jeremy M.

What is the speed of link between aboveground and belowground processes?
Kayler, Zachary; Gessler, Arthur; Buchmann, Nina

On light bulbs and marbles. Transfer times and teleconnections in plant fluid transport systems
Mencuccini, Maurizio; Hölttä, Teemu

Ecology and evolution on the banks of the St Lawrence
Stinchcombe, John R.

Ectomycorrhizal fungi and interspecific competition: species interactions, community structure, coexistence mechanisms, and future research directions
Kennedy, Peter

Host-selective toxins, Ptr ToxA and Ptr ToxB, as necrotrophic effectors in the Pyrenophora tritici-repentis-wheat interaction
Ciuffetti, Lynda M.; Manning, Viola A.; Pandelova, Iovanna; Betts, Melania Figueroa; Martinez, J. Patrick

Molecular traits controlling host range and adaptation to plants in Ralstonia solanacearum
Genin, Stéphane

Towards population genomics of effector-effector target interactions
Terauchi, Ryohei; Yoshida, Kentaro

Specific resistances against Pseudomonas syringae effectors AvrB and AvrRpm1 have evolved differently in common bean (Phaseolus vulgaris), soybean (Glycine max), and Arabidopsis thaliana
Chen, Nicolas W. G.; Sévignac, Mireille; Thareau, Vincent; Magdelenat, Ghislaine; David, Perrine; Ashfield, Tom; Innes, Roger W.; Geffroy, Valérie

The use of FLP-mediated recombination for the functional analysis of an effector gene family in the biotrophic smut fungus Ustilago maydis
Khrunyk, Yuliya; Münch, Karin; Schipper, Kerstin; Lupas, Andrei N.; Kahmann, Regine

Two virulence determinants of type III effector AvrPto are functionally conserved in diverse Pseudomonas syringae pathovars
Nguyen, Hanh P.; Yeam, Inhwa; Angot, Aurelie; Martin, Gregory B.

Functional characterization of the Xcs and Xps type II secretion systems from the plant pathogenic bacterium Xanthomonas campestris pv vesicatoria
Szczesny (Szczęsny), Robert; Jordan, Matthias; Schramm, Claudia; Schulz, Steve; Cogez, Virginie; Bonas, Ulla; Büttner, Daniela

Dual roles for the variable domain in protein trafficking and host-specific recognition of Heterodera glycines CLE effector proteins
Wang, Jianying; Lee, Chris; Replogle, Amy; Joshi, Sneha; Korkin, Dmitry; Hussey, Richard; Baum, Thomas J.; Davis, Eric L.; Wang, Xiaohong; Mitchum, Melissa G.

The Pseudomonas syringae effector protein HopZ1a suppresses effector-triggered immunity
Macho, Alberto P.; Guevara, Carlos M.; Tornero, Pablo; Ruiz-Albert, Javier; Beuzón, Carmen R.

Intracellular expression of a host-selective toxin, ToxA, in diverse plants phenocopies silencing of a ToxA-interacting protein, ToxABP1
Manning, Viola A.; Chu, Ashley L.; Scofield, Steven R.; Ciuffetti, Lynda M.

Promoter elements of rice susceptibility genes are bound and activated by specific TAL effectors from the bacterial blight pathogen, Xanthomonas oryzae pv. oryzae
Römer, Patrick; Recht, Sabine; Strauß, Tina; Elsaesser, Janett; Schornack, Sebastian; Boch, Jens; Wang, Shiping; Lahaye, Thomas

Suppression of the AvrBs1-specific hypersensitive response by the YopJ effector homolog AvrBsT from Xanthomonas depends on a SNF1-related kinase
Szczesny (Szczęsny), Robert; Büttner, Daniela; Escolar, Lucia; Schulze, Sebastian; Seiferth, Anja; Bonas, Ulla

Arabidopsis thaliana plant defensin AtPDF1.1 is involved in the plant response to biotic stress
De Coninck, Barbara M. A.; Sels, Jan; Venmans, Esther; Thys, Wannes; Goderis, Inge J. W. M.; Carron, Delphine; Delauré, Stijn L.; Cammue, Bruno P. A.; De Bolle, Miguel F. C.; Mathys, Janick

Molecular and chemical mechanisms involved in aphid resistance in cultivated tomato
Digilio, Maria Cristina; Corrado, Giandomenico; Sasso, Raffaele; Coppola, Valentina; Iodice, Luigi; Pasquariello, Marianna; Bossi, Simone; Maffei, Massimo E.; Coppola, Mariangela; Pennacchio, Francesco; Rao, Rosa; Guerrieri, Emilio

A new method for measuring relative growth rate can uncover the costs of defensive compounds in Arabidopsis thaliana
Paul-Victor, Cloé; Züst, Tobias; Rees, Mark; Kliebenstein, Daniel J.; Turnbull, Lindsay A.

Nitric oxide is involved in phosphorus deficiency-induced cluster-root development and citrate exudation in white lupin
Wang, B. L.; Tang, X. Y.; Cheng, L. Y.; Zhang, A. Z.; Zhang, W. H.; Zhang, F. S.; Liu, J. Q.; Cao, Y.; Allan, D. L.; Vance, C. P.; Shen, J. B.

Production of ectomycorrhizal mycelium peaks during canopy closure in Norway spruce forests
Wallander, Hakan; Johansson, Ulf; Sterkenburg, Erica; Brandström Durling, Mikael; Lindahl, Björn D.

Thirteen decades of foliar isotopes indicate declining nitrogen availability in central North American grasslands
McLauchlan, Kendra K.; Ferguson, Carolyn J.; Wilson, Iris E.; Ocheltree, Troy W.; Craine, Joseph M.

The challenge of tree height in Eucalyptus regnans: when xylem tapering overcomes hydraulic resistance
Petit, Giai; Pfautsch, Sebastian; Anfodillo, Tommaso; Adams, Mark A.

MicroRNAs, the epigenetic memory and climatic adaptation in Norway spruce
Yakovlev, Igor A.; Fossdal, Carl Gunnar; Johnsen, Oystein

Origin and expansion of the allotetraploid Aegilops geniculata, a wild relative of wheat
Arrigo, Nils; Felber, François; Parisod, Christian; Buerki, Sven; Alvarez, Nadir; David, Jacques; Guadagnuolo, Roberto

Genome-wide gene expression changes in genetically stable synthetic and natural wheat allohexaploids
Chagué, Véronique; Just, Jérémy; Mestiri, Imen; Balzergue, Sandrine; Tanguy, Anne-Marie; Huneau, Cecile; Huteau, Virginie; Belcram, Harry; Coriton, Olivier; Jahier, Joseph; Chalhoub, Boulos

Stabilizing selection on genome size in a population of Festuca pallens under conditions of intensive intraspecific competition
Šmarda, Petr; Horová, Lucie; Bureš, Petr; Hralová, Ivana; Marková, Michaela

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Molecular Biology and Evolution - 27 (4), IV 2010

Volume 27 Issue 4 April 2010

LETTERS

POPTREE2: Software for Constructing Population Trees from Allele Frequency Data and Computing Other Population Statistics with Windows Interface
Naoko Takezaki, Masatoshi Nei, and Koichiro Tamura

Evolution of Relative Reading Frame Bias in Unidirectional Prokaryotic Gene Overlaps
Peter J.A. Cock and David E. Whitworth

Rapid Proliferation of Repetitive Palindromic Elements in mtDNA of the Endemic Baikalian Sponge Lubomirskia baicalensis
Dennis V. Lavrov

RESEARCH ARTICLES

Inferring the Evolutionary History of Gene Clusters from Phylogenetic and Gene Order Data
Mathieu Lajoie, Denis Bertrand, and Nadia El-Mabrouk

Phylogenetic Analysis of Gene Structure and Alternative Splicing in a -Actinins
Monkol Lek, Daniel G. MacArthur, Nan Yang, and Kathryn N. North

Intragenic Recombination Events and Evidence for Hybrid Speciation in Nicotiana (Solanaceae)
Laura J. Kelly, Andrew R. Leitch, James J. Clarkson, Robin B. Hunter, Sandra Knapp, and Mark W. Chase

Modal Codon Usage: Assessing the Typical Codon Usage of a Genome
James J. Davis and Gary J. Olsen

Epidemic Dynamics Revealed in Dengue Evolution
S.N. Bennett, A.J. Drummond, D.D. Kapan, M.A. Suchard, J.L. Munoz-Jordán, O.G. Pybus, E.C. Holmes, and D.J. Gubler

Phylogenetic Analysis of Population-Based and Deep Sequencing Data to Identify Coevolving Sites in the nef Gene of HIV-1
Art F.Y. Poon, Luke C. Swenson, Winnie W.Y. Dong, Wenjie Deng, Sergei L. Kosakovsky Pond, Zabrina L. Brumme, James I. Mullins, Douglas D. Richman, P. Richard Harrigan, and Simon D.W. Frost

Slip into Something More Functional: Selection Maintains Ancient Frameshifts in Homopolymeric Sequences
Jennifer J. Wernegreen, Seth N. Kauppinen, and Patrick H. Degnan

An Evolutionary Genome Scan for Longevity-Related Natural Selection in Mammals
Richard W. Jobson, Benoit Nabholz, and Nicolas Galtier

Recombination Yet Inefficient Selection along the Drosophila melanogaster Subgroup’s Fourth Chromosome
J. Roman Arguello, Yue Zhang, Tomoyuki Kado, Chuanzhu Fan, Ruoping Zhao, Hideki Innan, WenWang, Manyuan Long

Origin and Diversification of Basic-Helix-Loop-Helix Proteins in Plants
Nuno Pires and Liam Dolan

Inferring Genealogical Processes from Patterns of Bronze-Age and Modern DNA Variation in Sardinia
Silvia Ghirotto, Stefano Mona, Andrea Benazzo, Francesco Paparazzo, David Caramelli, and Guido Barbujani

The Mitochondrial Porin, VDAC, Has Retained the Ability to Be Assembled in the Bacterial Outer Membrane
Dirk M. Walther, Martine P. Bos, Doron Rapaport, and Jan Tommassen

On the Estimation of the Insertion Time of LTR Retrotransposable Elements
T.E. Kijima and Hideki Innan

Isolation with Migration Models for More Than Two Populations
Jody Hey

The Divergence of Chimpanzee Species and Subspecies as Revealed in Multipopulation Isolation-with-Migration Analyses
Jody Hey

Exploring the Differences in Evolutionary Rates between Monogenic and Polygenic Disease Genes in Human
Soumita Podder and Tapash C. Ghosh

Multiple Evolutionary Rate Classes in Animal Genome Evolution
Christopher Oldmeadow, Kerrie Mengersen, John S. Mattick, and Jonathan M. Keith

Accelerated Mutation Accumulation in Asexual Lineages of a Freshwater Snail
Maurine Neiman, Gery Hehman, Joseph T. Miller, John M. Logsdon Jr, and Douglas R. Taylor

Nineteenth Century Seeds Reveal the Population Genetics of Landrace Barley ( Hordeum vulgare )
Matti W. Leino and Jenny Hagenblad

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