BMC Plant Biology - 12 (February), 2012

Contents:


Dissecting genetic architecture of grape proanthocyanidin composition through quantitative trait locus mapping

Yung-Fen Huang, Agnes Doligez, Alexandre Fournier-Level, Loic Le Cunff, Yves Bertrand, Aurélie Canaguier, Cécile Morel, Valérie Miralles, Frédéric Veran, Jean-Marc Souquet, Véronique Cheynier, Nancy Terrier, Patrice This


Bioinformatic identification of cassava miRNAs differentially expressed in response to infection by Xanthomonas axonopodis pv. manihotis

Álvaro L. Pérez-Quintero, Andrés Quintero, Oscar Urrego, Pablo Vanegas, Camilo López


Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)

She Tang, Yu Wang, Zefeng Li, Yijie Gui, Bingguang Xiao, Jiahua Xie, Qian-Hao Zhu, Longjiang Fan


Combinatorial analysis of lupulin gland transcription factors from R2R3Myb, bHLH and WDR families indicates a complex regulation of chs_H1 genes essential for prenylflavonoid biosynthesis in hop (Humulus Lupulus L.)

Jaroslav Matoušek, Tomáš Kocábek, Josef Patzak, Zoltán Füssy, Jitka Procházková, Arne Heyerick


Fostered and left behind alleles in peanut: interspecific QTL mapping reveals footprints of domestication and useful natural variation for breeding

Daniel Fonceka, Hodo-Abalo Tossim, Ronan Rivallan, Hélene Vignes, Issa Faye, Ousmane Ndoye, Márcio C. Moretzsohn, David J. Bertioli, Jean-Christophe Glaszmann, Brigitte Courtois, Jean-François Rami


Microsatellite allele dose and configuration establishment (MADCE): an integrated approach for genetic studies in allopolyploids

Thijs van Dijk, Yolanda Noordijk, Tiphaine Dubos, Marco C.A.M. Bink, Bert J. Meulenbroek, Richard G.F. Visser, Eric van de Weg 


Comprehensive analysis of tobacco pollen transcriptome unveils common pathways in polar cell expansion and underlying heterochronic shift during spermatogenesis

Said Hafidh, Katarína Breznenová, Petr Růžička, Jana Feciková, Věra Čapková, David Honys


AMS-dependent and independent regulation of anther transcriptome and comparison with those affected by other Arabidopsis anther genes

Xuan Ma, Baomin Feng, Hong Ma


The cold-induced basic helix-loop-helix transcription factor gene MdCIbHLH1 encodes an ICE-like protein in apple

Xiao-Ming Feng, Qiang Zhao, Ling-Ling Zhao, Yu Qiao, Xing-Bin Xie, Hui-Feng Li, Yu-Xin Yao, Chun-Xiang You, Yu-Jin Hao


Functional alleles of the flowering time regulator FRIGIDA in the Brassica oleracea genome

Judith A. Irwin, Clare Lister, Eleni Soumpourou, Yanwen Zhang, Elaine C. Howell, Graham Teakle, Caroline Dean


Comparative transcriptome analysis of stylar canal cells identifies novel candidate genes implicated in the self-incompatibility response of Citrus clementina

Marco Caruso, Paz Merelo, Gaetano Distefano, Stefano La Malfa, Angela Lo Piero, Francisco R. Tadeo, Manuel Talon, Alessandra Gentile


Characterization of a calcium/calmodulin-regulated SR/CAMTA gene family during tomato fruit development and ripening

Tianbao Yang, Hui Peng, Bruce D. Whitaker, William S. Conway


Identification of novel microRNAs in Hevea brasiliensis and computational prediction of their targets

Virginie Gébelin, Xavier Argout, Worrawat Engchuan, Bertrand Pitollat, Cuifang Duan, Pascal Montoro, Julie Leclercq


Organ specificity and transcriptional control of metabolic routes revealed by expression QTL profiling of source--sink tissues in a segregating potato population

Bjorn Kloosterman, A.M. Anithakumari, Pierre-Yves Chibon, Marian Oortwijn, Gerard C. van der Linden, Richard GF Visser, Christian W.B. Bachem

BMC Plant Biology - 12 (January), 2012

Contents:


Genome-wide association studies for agronomical traits in a world wide spring barley collection

Raj K Pasam, Rajiv Sharma, Marcos Malosetti, Fred A van Eeuwijk, Grit Haseneyer, Benjamin Kilian, Andreas Graner 


The role of the Arabidopsis FUSCA3 transcription factor during inhibition of seed germination at high temperature

Rex S Chiu, Hardeep Nahal, Nicholas J Provart, Sonia Gazzarrini 


Combining SNP discovery from next-generation sequencing data with bulked segregant analysis (BSA) to fine-map genes in polyploid wheat

Martin Trick, Nikolai Adamski, Sarah G Mugford, Cong-Cong Jiang, Melanie Febrer, Cristobal Uauy 


Characterization of resistance to pine wood nematode infection in Pinus thunbergii using suppression subtractive hybridization

Tomonori Hirao, Eitaro Fukatsu, Atsushi Watanabe 


QTL and candidate gene mapping for polyphenolic composition in apple fruit

David Chagné, Célia Krieger, Maysoon Rassam, Mike Sullivan, Jenny Fraser, Christelle André, Massimo Pindo, Michela Troggio, Susan E Gardiner, Rebecca A Henry, Andrew C Allan, Tony K McGhie, William A Laing 


Plasma membrane protein OsMCA1 is involved in regulation of hypo-osmotic shock-induced Ca2+ influx and modulates generation of reactive oxygen species in cultured rice cells

Takamitsu Kurusu, Daisuke Nishikawa, Yukari Yamazaki, Mariko Gotoh, Masataka Nakano, Haruyasu Hamada, Takuya Yamanaka, Kazuko Iida, Yuko Nakagawa, Hikaru Saji, Kazuo Shinozaki, Hidetoshi Iida, Kazuyuki Kuchitsu


Development and characterization of BAC-end sequence derived SSRs, and their incorporation into a new higher density genetic map for cultivated peanut (Arachis hypogaea L.)

Hui Wang, R. Varma Penmetsa, Mei Yuan, Limin Gong, Yongli Zhao, Baozhu Guo, Andrew D. Farmer, Benjamin D. Rosen, Jinliang Gao, Sachiko Isobe, David J Bertioli, Rajeev K Varshney, Douglas R. Cook, Guohao He


Integration of gene-based markers in a pearl millet genetic map for identification of candidate genes underlying drought tolerance quantitative trait loci

Deepmala Sehgal, Vengaldas Rajaram, Ian Armstead, Vincent Vadez, Yash Yadav, Charles Hash, Rattan Yadav 


Defects in leaf carbohydrate metabolism compromise acclimation to high light and lead to a high chlorophyll fluorescence phenotype in Arabidopsis thaliana

Jessica Schmitz, Mark Schöttler, Stephan Krueger, Stefan Geimer, Anja Schneider, Tatjana Kleine, Dario Leister, Kirsten Bell, Ulf-Ingo Flügge, Rainer E. Häusler


A genomics approach to understanding the role of auxin in apple (Malus x domestica) fruit size control

Fanny Devoghalaere, Thomas Doucen, Baptiste Guitton, Jeannette Keeling, Wendy Payne, Toby Ling, John Ross, Ian Hallett, Kularajathevan Gunaseelan, GA Dayatilake, Robert Diak, Ken C Breen, D Stuart Tustin, Evelyne Costes, David Chagné, Robert Schaffer, Karine David


Arabidopsis plants grown in the field and climate chambers significantly differ in leaf morphology and photosystem components

Yogesh Mishra, Hanna Johansson Jänkänpää, Anett Z. Kiss, Christiane Funk, Wolfgang P. Schröder, Stefan Jansson 


Analysis of ADP-glucose pyrophosphorylase expression during turion formation induced by abscisic acid in Spirodela polyrhiza (greater duckweed)

Wenqin Wang, Joachim Messing 


Triacylglycerol synthesis by PDAT1 in the absence of DGAT1 activity is dependent on re-acylation of LPC by LPCAT2

Jingyu Xu, Anders S. Carlsson, Tammy Francis, Meng Zhang, Travis Hoffman, Michael E. Giblin, David C. Taylor


Inter-and intraspecific variation in fern mating systems after long-distance colonization: the importance of selfing

G. Arjen de Groot, Betty Verduyn, E.R. Jasper Wubs, Roy H.J. Erkens, Heinjo J. During


The upregulation of thiamine (vitamin B1) biosynthesis in Arabidopsis thaliana seedlings under salt and osmotic stress conditions is mediated by abscisic acid at the early stages of this stress response

Maria Rapala-Kozik, Natalia Wolak, Marta Kujda, Agnieszka K .Banaś


SSR markers in transcripts of genes linked to post-transcriptional and transcriptional regulatory functions during vegetative and reproductive development of Elaeis guineensis

Timothy Tranbarger, Wanwisa Kluabmongkol, Duangjai Sangsrakru, Fabienne Morcillo, James W. Tregear, Somvong Tragoonrung, Norbert Billotte














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