Contents:
Research Articles
Yuki Dehara, Yasuyuki Hashiguchi, Kazumi Matsubara, Tokuma Yanai, Masahito Kubo, and Yoshinori Kumazawa
Characterization of Squamate Olfactory Receptor Genes and Their Transcripts by the High-Throughput Sequencing Approach
Giltae Song, Cathy Riemer, Benjamin Dickins, Hie Lim Kim, Louxin Zhang, Yu Zhang, Chih-Hao Hsu, Ross C. Hardison, Eric D. Green, Webb Miller and NISC Comparative Sequencing Program
Revealing Mammalian Evolutionary Relationships by Comparative Analysis of Gene Clusters
Heidi J. T. Pagán, Jiří Macas, Petr Novák, Eve S. McCulloch, Richard D. Stevens, and David A. Ray
Survey Sequencing Reveals Elevated DNA Transposon Activity, Novel Elements, and Variation in Repetitive Landscapes among Vesper Bats
Paul Po-Shen Wang and Ilya Ruvinsky
Family Size and Turnover Rates among Several Classes of Small Non–Protein-Coding RNA Genes in Caenorhabditis Nematodes
Michael Dannemann, Kay Prüfer, Esther Lizano, Birgit Nickel, Hernán A. Burbano, and Janet Kelso
Transcription Factors Are Targeted by Differentially Expressed miRNAs in Primates
Yuh Chwen G. Lee and Josephine A. Reinhardt
Widespread Polymorphism in the Positions of Stop Codons in Drosophila melanogaster
Chungoo Park and Jianzhi Zhang
High Expression Hampers Horizontal Gene Transfer
Dee R. Denver, Larry J. Wilhelm, Dana K. Howe, Kristin Gafner, Peter C. Dolan, and Charles F. Baer
Variation in Base-Substitution Mutation in Experimental and Natural Lineages of Caenorhabditis Nematodes
Kirill Kryukov, Kenta Sumiyama, Kazuho Ikeo, Takashi Gojobori, and Naruya Saitou
A New Database (GCD) on Genome Composition for Eukaryote and Prokaryote Genome Sequences and Their Initial Analyses
Thorsten Thiergart, Giddy Landan, Marc Schenk, Tal Dagan, and William F. Martin
An Evolutionary Network of Genes Present in the Eukaryote Common Ancestor Polls Genomes on Eukaryotic and Mitochondrial Origin
Ericka A. Becker, Charles M. Burns, Enrique J. León, Saravanan Rajabojan, Robert Friedman, Thomas C. Friedrich, Shelby L. O'Connor, and Austin L. Hughes
Experimental Analysis of Sources of Error in Evolutionary Studies Based on Roche/454 Pyrosequencing of Viral Genomes
Franz Baumdicker, Wolfgang R. Hess, and Peter Pfaffelhuber
The Infinitely Many Genes Model for the Distributed Genome of Bacteria
Robert S. Young, Ana C. Marques, Charlotte Tibbit, Wilfried Haerty, Andrew R. Bassett, Ji-Long Liu, and Chris P. Ponting
Identification and Properties of 1,119 Candidate LincRNA Loci in the Drosophila melanogaster Genome
Ignacio Maeso, Scott William Roy, and Manuel Irimia
Widespread Recurrent Evolution of Genomic Features
Book Reviews
Adam S. Wilkins
Evolution: A View from the 21st Century
Editorials
Society for Molecular Biology and Evolution (SMBE) Council and Business Meetings, 2011 Kyoto, Japan
Erratum
Christian Woehle, Tal Dagan, William F. Martin, and Sven B. Gould
Red and Problematic Green Phylogenetic Signals among Thousands of Nuclear Genes from the Photosynthetic Apicomplexan Chromera velia
