Genome Biology and Evolution - 4 (11), 2012

Contents:

Research Articles

        Andrea Hodgins-Davis, Aleksandra B. Adomas, Jonas Warringer, and Jeffrey P. Townsend
    Abundant Gene-by-Environment Interactions in Gene Expression Reaction Norms to Copper within Saccharomyces cerevisiae
   
        Renfu Shao, Xing-Quan Zhu, Stephen C. Barker, and Kate Herd
    Evolution of Extensively Fragmented Mitochondrial Genomes in the Lice of Humans
   
        Ken Daigoro Yokoyama and David D. Pollock
    SP Transcription Factor Paralogs and DNA-Binding Sites Coevolve and Adaptively Converge in Mammals and Birds
  
        Peter W. Harrison, Judith E. Mank, and Nina Wedell
    Incomplete Sex Chromosome Dosage Compensation in the Indian Meal Moth, Plodia interpunctella, Based on De Novo Transcriptome Assembly
  
        Yuichiro Hara, Tadashi Imanishi, and Yoko Satta
    Reconstructing the Demographic History of the Human Lineage Using Whole-Genome Sequences from Human and Three Great Apes
  
        Danielle Venton
    Highlight: Family Ties—New Evidence Simplifies Human Evolutionary Tree
   
        Christa E. Moore, Bruce Curtis, Tyler Mills, Goro Tanifuji, and John M. Archibald
    Nucleomorph Genome Sequence of the Cryptophyte Alga Chroomonas mesostigmatica CCMP1168 Reveals Lineage-Specific Gene Loss and Genome Complexity
   
        Daniel Croll and Bruce A. McDonald
    Intron Gains and Losses in the Evolution of Fusarium and Cryptococcus Fungi
   
        Guoqin Yu and Arlin Stoltzfus
    Population Diversity of ORFan Genes in Escherichia coli
  
        Raquel Assis, Qi Zhou, and Doris Bachtrog
    Sex-Biased Transcriptome Evolution in Drosophila
  
Letters

        Janna L. Fierst and Patrick C. Phillips
    Variance in Epistasis Links Gene Regulation and Evolutionary Rate in the Yeast Genetic Interaction Network
   
        Sankar Subramanian and David M. Lambert
    Selective Constraints Determine the Time Dependency of Molecular Rates for Human Nuclear Genomes
   
Erratum

        Andrea Hodgins-Davis, Aleksandra B. Adomas, Jonas Warringer, and Jeffrey P. Townsend
    Abundant Gene-by-Environment Interactions in Gene Expression Reaction Norms to Copper within Saccharomyces cerevisiae
   
        Ching-Ping Lin, Chung-Shien Wu, Ya-Yi Huang, and Shu-Miaw Chaw
    The Complete Chloroplast Genome of Ginkgo biloba Reveals the Mechanism of Inverted Repeat Contraction
   
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Ecology, Evolution, and Systematics - 43, 2012

Contents:

Scaling Up in Ecology: Mechanistic Approaches
Mark Denny and Lisandro Benedetti-Cecchi

Adaptive Genetic Variation on the Landscape: Methods and Cases
Sean D. Schoville, Aurélie Bonin, Olivier François, Stéphane Lobreaux, Christelle Melodelima, and Stéphanie Manel

Endogenous Plant Cell Wall Digestion: A Key Mechanism in Insect Evolution
Nancy Calderón-Cortés, Mauricio Quesada, Hirofumi Watanabe, Horacio Cano-Camacho, and Ken Oyama

New Insights into Pelagic Migrations: Implications for Ecology and Conservation
Daniel P. Costa, Greg A. Breed, and Patrick W. Robinson

The Biogeography of Marine Invertebrate Life Histories
Dustin J. Marshall, Patrick J. Krug, Elena K. Kupriyanova, Maria Byrne, and Richard B. Emlet

Mutation Load: The Fitness of Individuals in Populations Where Deleterious Alleles Are Abundant
Aneil F. Agrawal and Michael C. Whitlock

From Animalcules to an Ecosystem: Application of Ecological Concepts to the Human Microbiome
Noah Fierer, Scott Ferrenberg, Gilberto E. Flores, Antonio González, Jordan Kueneman, Teresa Legg, Ryan C. Lynch, Daniel McDonald, Joseph R. Mihaljevic, Sean P. O'Neill, Matthew E. Rhodes, Se Jin Song, and William A. Walters

Effects of Host Diversity on Infectious Disease
Richard S. Ostfeld and Felicia Keesing

Coextinction and Persistence of Dependent Species in a Changing World
Robert K. Colwell, Robert R. Dunn, and Nyeema C. Harris

Functional and Phylogenetic Approaches to Forecasting Species' Responses to Climate Change
Lauren B. Buckley and Joel G. Kingsolver

Rethinking Community Assembly through the Lens of Coexistence Theory
J. HilleRisLambers, P.B. Adler, W.S. Harpole, J.M. Levine, and M.M. Mayfield

The Role of Mountain Ranges in the Diversification of Birds
Jon Fjeldsa, Rauri C.K. Bowie, and Carsten Rahbek

Evolutionary Inferences from Phylogenies: A Review of Methods
Brian C. O'Meara

A Guide to Sexual Selection Theory
Bram Kuijper, Ido Pen, and Franz J. Weissing

Ecoenzymatic Stoichiometry and Ecological Theory
Robert L. Sinsabaugh and Jennifer J. Follstad Shah

Origins of New Genes and Evolution of Their Novel Functions
Yun Ding, Qi Zhou, and Wen Wang

Climate Change, Aboveground-Belowground Interactions, and Species' Range Shifts
Wim H. Van der Putten

Inflammation: Mechanisms, Costs, and Natural Variation
Noah T. Ashley, Zachary M. Weil, and Randy J. Nelson

New Pathways and Processes in the Global Nitrogen Cycle
Bo Thamdrup

Beyond the Plankton Ecology Group (PEG) Model: Mechanisms Driving Plankton Succession
Ulrich Sommer, Rita Adrian, Lisette De Senerpont Domis, James J. Elser, Ursula Gaedke, Bas Ibelings, Erik Jeppesen, Miquel Lürling, Juan Carlos Molinero, Wolf M. Mooij, Ellen van Donk, and Monika Winder

Global Introductions of Crayfishes: Evaluating the Impact of Species Invasions on Ecosystem Services
David M. Lodge, Andrew Deines, Francesca Gherardi, Darren C.J. Yeo, Tracy Arcella, Ashley K. Baldridge, Matthew A. Barnes, W. Lindsay Chadderton, Jeffrey L. Feder, Crysta A. Gantz, Geoffrey W. Howard, Christopher L. Jerde, Brett W. Peters, Jody A. Peters, Lindsey W. Sargent, Cameron R. Turner, Marion E. Wittmann, and Yiwen Zeng

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