The genus Myrosmodes (Orchidaceae: Cranichidinae) in Argentina

The genus Myrosmodes (Orchidaceae: Cranichidinae) in Argentina

Claudia M. Martín, Christian A. Zanotti and Gustavo J. Scrocchi

 

Abstract 

Lilie z mojego ogródka (Lilium - My Garden)

Gorteria - 36 (1), 2012

Contents:
    

W. de Winter & M. Lubienski
Equisetum ×ascendens Lubienski & Bennert: de eerste triploide paardenstaartbastaard in Nederland    

R. Haveman & I. de Ronde
Nieuwe vindplaatsen van Mibora minima (L.) Desv. (Dwerggras) in de Texelse duinen
   
Korte mededeling
   
R.C.M.J. van Moorsel
Over Carex tomentosa L. (Viltzegge)    

Boekbespreking    
     
T. van Andel & E. van Gelder (red.)
Bloeiende Kennis: Groene ontdekkingen in de Gouden Eeuw
   
Boekaankondigingen    

Aanwijzingen voor de auteurs     Binnenkant achterkaft


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Streptocarpus (skrętnik) for ... Lulu

Asklepios - 112, 2011 (and Hoya desvoeuxensis)

Contents:

Editorial   
Alan Butler

Caralluma europaea on Lampedusa Island   
P.Zito & M.Sajeva

Caralluma pauciflora, an endemic Caralluma taxon from India   
Soumen Aditya

Further notes on Caralluma adscendens v. carinata and v. geniculata   
Soumen Aditya

New species of Hoya from Fiji - Hoya desvoeuxensis   
Ted Green, Dale Kloppenburg

The real Edithcolea in Bakersfield   
Bruce Hargreaves

Notes on some Edible, Medicinal and Magical Xerophytic, Tuberous or Succulent Asclepiads and a Firework (part two)   
Pat Collins
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Gorteria - 35 (5), 2011

Contents:

J. Koopman: Carex ×ploegii hybr. nov. [= Carex otrubae Podp. × C. paniculata L.] (Cyperaceae)
 
E. Oosterveld: Lepelbladveenmos (Sphagnum platyphyllum (Braithw.) Warnst.) na 50 jaar terug in Nederland
   
B.F. van Tooren & M.C. van Westen: Het geslacht Micrasterias Ralfs (Desmidiaceae) in Nederland
   
R.J.W.M. van der Ham: Geschubde mannetjesvaren in Nederland voor het eerst op een muur gevonden
   

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Annales Botanici Fennici - 48 (6), 2011 (Hoya sapaensis new species from Vietnam)

Contents:

Bacchetta, G., Fenu, G., Grillo, O., Mattana, E. & Venora, G. 2011: Identification of Sardinian species of Astragalus section Melanocercis (Fabaceae) by seed image analysis.

Scassellati, E., Abbate, G. & Lucchese, F. 2011: Lectotypification of Statice canescens Host and Armeria majellensis Boiss. (Plumbaginaceae). 

Iamonico, D., Giovi, E., Iberite, M. & Abbate, G. 2011: Typification of Trifolium latinum Sebast. (Fabaceae) and comparison with similar species. 

Pangua, E., Pérez-Ruzafa, I. & Pajarón, S. 2011: Gametophyte features in a peculiar annual fern, Anogramma leptophylla. 

Molnár, K. & Farkas, E. 2011: Depsides and depsidones in populations of the lichen Hypogymnia physodes and its genetic diversity. 

Pahlevani, A., Geltman, D. V. & Riina, R. 2011: Taxonomic revision of Euphorbia subsect. Myrsiniteae in Iran. 

Nobis, M. 2011: Stipa kotuchovii, nom. nov. (Poaceae). 

Cannon, C. H. & Chen, X. 2011: Lithocarpus pulongtauensis (Fagaceae), a new species from Borneo. 

Gagarina, L. V. 2011: Gyalecta titovii, a new corticolous lichen species from Abkhazia and Russia. 

Arabaci, T. & Dirmenci, T. 2011: Cirsium yildizianum (Asteraceae: Cynareae), a new species from East Anatolia, Turkey. 

Ilçim, A., Behçet, L. & Tel, A. Z. 2011: Campanula hacerae (Campanulaceae), a new species from Turkey. 

Tran, T. B., Rodda, M., Kim, J. H., Lee, J., Kim, D. K. & Ha, B. T. 2011: Hoya sapaensis (Apocynaceae, Asclepiadoideae), a new species from Vietnam. 

Tseng, Y. H. & Chao, C. T. 2011: Tylophora lui (Apocynaceae), a new species from Taiwan. 

Lin, C. R. & Liu, Y. 2011: Aspidistra longituba (Ruscaceae), a new species from Guangxi, China. 

Vu, Q. N. & Xia, N. H. 2011: Magnolia bidoupensis (Magnoliaceae), a new species from Vietnam. 

Nomenclatural novelties in Ann. Bot. Fennici 48(6). 

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African Journal of Pharmacy and Pharmacology - 5 (19-22), 2011

African Journal of Pharmacy and Pharmacology - 5 (19), 2011



Contents:


Research Articles

 
Abdul Wahab, Gul Majid Khan, Muhammad Akhlaq, Nauman Rahim Khan, Abid Hussain, Alam Zeb, Asim-ur- Rehman and Kifayat Ullah Shah

        Pre-formulation investigation and in vitro evaluation of directly compressed ibuprofen-ethocel oral controlled release matrix tablets: A kinetic approach

       
Mohammad Talebi, Maryam Mashayekhi, Soodeh Rajabi, Mohammadreza Rahmani, Ali Roohbakhsh and Ali Shamsizadeh

        Effect of chronic morphine treatment on tactile learning in rat

       
LIMA Gláucia Manoella de Souza, SOUZA Larissa Isabela Oliveira, ROSATO Yoko Bomura and ARAÚJO Janete Magali

        Detection of bacteriocins in Zymomonas mobilis and RAPD fingerprinting of the producer strains

       
M. Rajendran, M. Mahalakshmi, R. Ramya and D. Devapiriam

        A semi-empirical study of flavone compounds with antioxidant efficiency

       
Luana Kamila A. Braga, Aruan Kawally C. de Macedo, Ariathanna A. Cunha, Joao Marcos F. L. Silva, Francisco A. V. Santos, Celestina E. S. Souza, Henrique D. M. Coutinho, Thiago S. Almeida, José G. M. Costa and  Edinardo F. F. Matias

        Potentiation of in vitro antibiotic activity by Ocimum gratissimum L.

     
Iqbal Hussain, Naeem Khan, Riaz Ullah, Shanzeb, Shabir Ahmed, Farhat Ali Khan and Sultan Yaz

        Phytochemical, physiochemical and anti-fungal activity of Eclipta alba

       
Hossein Rostami, Ali Aliyev, Valida Madatova and Ali Arasteh

        Effects of physical activity on some of hemostatic parameters changes in epiphysectomized rats
       

O. A. Ayoola, R. A. Baiyewu, J. N. Ekunola, B. A. Olajire, J. A. Egunjobi, E. O. Ayeni and O. O. Ayodele

        Phytoconstituent screening and antimicrobial principles of leaf extracts of two variants of Morus alba (S30 and S54)

       
Rahbani Mohammad, Mohajeri Daryoush, Rezaie Ali, Doustar Yousef and Nazeri Mehrdad

        Attenuation of oxidative stress of hepatic tissue by ethanolic extract of saffron (dried stigmas of Crocus sativus L.) in streptozotocin (STZ)-induced diabetic rats   

       
Saeed Al-Zahrani, Saleh Kandeal, Mohamed Mohany and Gamal Badr

        Effects of vitamin E and thymoquinone on physiological and histological characteristics of heat-stressed male mice 

      

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African Journal of Pharmacy and Pharmacology - 5 (20), 2011



Contents:


Research Articles

 
L. P. Nkomo, E. Green and R. N Ndip

        Preliminary phytochemical screening and in vitro anti-Helicobacter pylori activity of extracts of the leaves of Lippia javanica

        
Huaiping Shi, Yamei He, Qingwang Li, Tao Feng, Guoxia Geng and Jian Li

        Effect of Bidens bipircadta L. on mouse uterine cervix cancer

     
Xi-Qian Xing, Bei Han, Xu-Wei Wu, Yi Xiao and Shang-Jie Wu

        Efficacy and safety of prostacyclins therapy in pulmonary arterial hypertension: A meta-analysis

      
N. Ebrahim and R. A. Uebel

        Direct inhibition of cyclooxygenase-2 enzyme by an extract of Harpagophytum procumbens, harpagoside and harpagide

      
Rohaya Megat Abdul Wahab, Maryati Md Dasor, Sahidan Senafi, Asma Alhusna Abang Abdullah, Abdul Aziz Jemain, Nurfathiha Abu Kasim, Zulham Yamamoto and Shahrul Hisham Zainal Ariffin

        Crevicular tartrate resistant acid phosphatase activity and rate of tooth movement under different continuous force applications

       
Aschalew Nardos, Eyasu Makonnen and Asfaw Debella

        Effects of crude extracts and fractions of Moringa stenopetala (Baker f)  Cufodontis leaves in normoglycemic and alloxan-induced diabetic mice

       
Zahid Zaheer, Aniruddha P. Paithankar, Sagar D. Deshpande and Subur Khan

        Optimization of extraction process and phytochemical investigations of Spathodea campanulata flowers
        

Liu ji, Zhou xiao and Jiang jie

        A validated HPLC method for the determination of levobupivacaine in plasma and its application to pharmacokinetic studies in Chinese people

       
Sajid Bashir, Tahir Aqeel, Muhammad Usman, Shahiq uz Zaman, Asadullah Madni, Haji M. Shoaib Khan, Abubakar Munir and Arshad Mahmood

        Comparative assessment of drug interactions in pediatrics at private and public sector hospitals of Sargodha and Faisalabad   

      
Cuiyan Tang, Mingjun Bi, Hongmei Yu, Wei Chen and Jinxiu Wang

        Zerumbone protects HEK 293 cells from irradiation-induced DNA damage via activating Keap1/Nrf2/ARE pathway

        
Flávio Luís Beltrame, Carla Cristine Kanunfre, Bruno Rainho, Elaine Kiatkoski, Francine Mioduski, Marcelo Henrique Kravicz and Luís Antônio Esmerino

        Evaluation of biochemical and microbiological effects of Cordyline dracaenoides Kunth (Uvarana) barks

      
Soodabe Gharibe, Shahrara Afshar and Leila Vafayi

        Synthesis and characterization of porous hollow silica nanoparticles using ZnSe core as template for drug delivery application

       
Haroon Khan, Shafiq Ahmad Tariq, Murad Ali Khan, Inayat-Ur-Rehman, Rukhsana Ghaffar and Saifullah

        Cholinesterase and lipoxygenase inhibition of whole plant Withania somnifera

       
David López Jiménez, Antonio J. Monroy Antón and Gema Sáez Rodríguez

        Self-regulation and education on interactive advertising of pharmaceuticals for human use

        
Che Nor Zarida C. S., Fauziah O., Arifah A. K., Azfar Rizal A., Nazri M. Y., Ahmad Hafiz Z., Rusnah M., Mohd Azam Khan G. K. and Hasni Idayu S.7

        In vitro elution and dissolution of tobramycin and gentamicin from calcium phosphate

       
Muhammad Hassham Hassan Bin Asad, Ghulam Murtaza1, Sami Siraj, Shujaat Ali Khan, Saira Azhar, Muhammad Sikander Hussain, Tariq Ismail, Muhammad Shahzad Hussain and Izhar Hussain

        Enlisting the scientifically unnoticed medicinal plants of Pakistan as a source of novel therapeutic agents showing anti-venom activity

      
Akhtar Rasul, Naveed Akhtar, Barkat Ali Khan, Tariq Mahmood, Shahiq uz Zaman, Atif Ali, Haji M. Shoaib Khan and Rashida Parveen

        Assessment of anti erythmic and skin whitening effects of milk thistle extract

       
Tadeu J. S. Peixoto Sobrinho, Valérium T. N. A. Castro, Antonio M. Saraiva, Diego M. Almeida, Elvis A. Tavares and Elba L. C. Amorim

        Phenolic content and antioxidant capacity of four Cnidoscolus species (Euphorbiaceae) used as ethnopharmacologicals in Caatinga, Brazil

       
Li Tong, Yu Shaoyi, Zhang Ge and Huang Weizhe

        Effect of Astragalus mongholicus injection liquid on the immunity function in children with congenital heart disease (CHD) after undergoing cardiopulmonary bypass surgery

       
Naveed Muhammad and Muhammad Saeed

        Biological screening of Viola betonicifolia Smith whole plant

      
Aiyalu Rajasekaran and Muthusamy Periasamy

        Protective effect of ethanolic root extract of Plumbago indica L. on paracetamol induced hepatotoxicity in rats

        
Naphatsorn Kumar, Somsak Tharatha and Chaiyavat Chaiyasut

        Development and validation of simple isocratic high performance liquid chromatography-ultraviolet (HPLC-UV) method for determination of safflower yellow in Carthamus tinctorius (L.)-loaded nanostructured lipid carriers (NLC)

       
Muhammad Hanif, M. Harris Shoaib, Rabia Ismail Yousuf, Ahmad Khan, Sohail Anwer, Akhter Rasul, Shahnila Sattar and Hafiz Muhammad Arshad

        Reverse phase high performance liquid chromatographic (HPLC) method for nimesulide tablets dosage form prepared for in vivo in vitro correlation (IVIVC) studies

       

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African Journal of Pharmacy and Pharmacology - 5 (21), 2011



Contents:


Research Articles

 
Zhi-Tong Zuo, Yong Ji, Bao-Hua Chen, Xu Wang and Chun-Hua Ling

        The correlation between pulmonary arterial pressure and brain natriuretic  peptide in patients with chronic obstructive pulmonary disease

       
Chen-Xiaoxi

        BS and BS-contained rat serum’s anticancer activities


M. Govindappa, N. Bharath, H. B. Shruthi, T. S. Sadananda and P. Sharanappa

        Antimicrobial, antioxidant and in vitro anti-inflammatory activity and phytochemical screening of Crotalaria pallida Aiton

      
Serdar Sargin, Bekir Yavuz Uçar, Serdar Necmioglu, Mehmet Bulut and Mehmet Gem

        Clinical and radiological results of posterior instrumentation without fusion for thoracolumbar fractures

        
Lei YANG, Xiao-Yun LI, Ying-Li ZHEN, Yan LU, Nong CAO and Chen ChAI

        The cardiovascular inhibition functions evoked by salusin ß within the caudal ventrolateral medulla are mediated by muscarinic receptors mechanism

       
Mohammad Reza Farahpour, Human Taghikhani, Mostafa Habibi and Mohammad Amin Zandieh

        Wound healing activity of flaxseed Linum usitatissimum L. in rats

       
Pinto N. S, Pereira M. O, Carmo F. S, Diniz C. L, Medeiros A. C, Santos-Filho S. D and Bernardo-Filho M

        Protective effect of an aqueous extract of 3 Ballerina against the action of the stannous chloride in Escherichia coli BW9091

       
Heydari Nasrabadi, M, Tajabadi Ebrahimi, M, Dehghan Banadaki, Sh, Torabi Kajousangi, M and Zahedi, F

        Study of cutaneous wound healing in rats treated with Lactobacillus plantarum on days 1, 3, 7, 14 and 21
       

Harrison Wanyika, Erastus Gatebe, Paul Kioni, Zhiyong Tang and Yan Gao

        Synthesis and characterization of ordered mesoporous silica nanoparticles with tunable physical properties by varying molar composition of reagents  

      
Ni Zheng, Zhaoyu Wang, Feng Chen and Jingming Lin

        Evaluation to the antioxidant activity of total flavonoids extract from Syzygium jambos seeds and optimization by response surface  methodology 


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African Journal of Pharmacy and Pharmacology - 5 (22), 2011



Contents:


Research Articles

  
Gholamreza Dehghan Noudeh, Fariba Sharififar, Payam Khazaeli, Ehsan Mohajeri and Javad Jahanbakhsh

        Formulation of herbal conditioner shampoo by using extract of fenugreek seeds and evaluation of its physicochemical parameters

       
Danyang Dou, Wanjun Tao, Lingling Li, Tingjian Jia, Wings TY Loo, Mary NB Cheung, Louis WC Chow, Yiding Dou and Ziyuan Luo

        Immuno-stabilizing effect of thymosin-alpha-1 on post-modified radical mastectomy (MRM) of breast cancer patients

       
Alireza Seidavi

        Investigation on intera-specific biodiversity of 6 local silkworm germplasm based on aspartate amino transferase, alanin amino transferase, alkaline phosphatase, phosphorus, sodium, potassium and iron

       
Jingtao Wu, Guiwen Yang, Wujun Wen, Fumiao Zhang, Jinduo Yuan and Liguo An

        Cholesterol metabolism regulation and antioxidant effect of platycodin D on hyperlipidemic emulsion-reduced rats

      
Yan-Bin Wu, Li-Jun Zheng, Jun Yi, Jian-Guo Wu, Chun-Jiang Tan, Ti-Qiang Chen, Jin-Zhong Wu and Ka-Hing Wong

        A comparative study on antioxidant activity of ten different parts of Nelumbo nucifera Gaertn.

       
Xiao-hong Tan, Han Dong, Fu-cui Ma and Dai-cheng Liu

        Deer skin glue improves erectile function in rats

      
Lei Pang, Xin Lian, Yanhui Li, Ling Nan and Haichun Ma

        Efficacy and safety of parecoxib sodium after renal transplantation

      
O. O. Okoh and A. J. Afolayan

        The effects of hydrodistillation and solvent free microwave extraction methods on the chemical composition and toxicity of essential oils from the leaves of Mentha longifolia L. subsp. capensis.
       

Atta Ur Rehman

        Adoption of WHO standard operating procedures for blood screening in hospitals of Islamabad, Pakistan  

     
Zayd K. Omer, Yuehui Wang, Jieyu Liu, Yu Liu and Bin Liu

        Protection of diabetes-induced cardiomyopathy by resveratrol and its effects on glycogen synthase kinase 3 beta (GSK-3beta) and by the protein kinase  (AKT2) activities 

       
O. S. Olorunnisola, G. Bradley and A. J. Afolayan

        Antioxidant properties and cytotoxicity evaluation of methanolic extract of dried and fresh rhizomes of Tulbaghia violacea 

       
Duygu Tozcu Altin, Çigdem Özer, Ediz Yeşilkaya, Aydan Babül, Aysun Bideci and Peyami Cinaz

        Effect of the plant growth regulator (4-Chlorophenoxy acetic acid) into the oxidative stress parameters in rat liver 

       
Gamal Badr

        CXC chemokine ligand 12 (CXCL12) via its cognate receptor (CXCR4) controls the chemotaxis of multiple myeloma cell line (U266) via PI3K/AKT, PLCß3, RhoA, NF?B and ERK1/2 

      
Yazar Hayrullah, Balci Mehmet, Basarali Kemal Mustafa, Gocmen Ayse Yesim and Buyukbas Sadik

        The effects of dialysers on some blood biochemical parameters in hemodialysis patients 

       
Guang Chen, Meishan Jin, Shan Lin, Peisong Wang, Jia Liu, Chenyao Li, Liyan Xu and Wei Zhang

        Increased expression cysteine-rich61 (Cyr61) in patients with thyroid carcinomas 

      
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Clematis 'Omoshiro' / powojnik 'Omoshiro'

Clematis 'Joanna' / Powojnik 'Joanna'

Potentilla nepalensis / Pięciornik nepalski

Astilbe simplicifolia 'Sprite' - Tawułka pojedynczolistna 'Sprite'

Rodzaj / genus: Tawułka / Astilbe
Gatunek / species: pojedynczolistna / simplicifolia
Kultywar / cultivar: Sprite
Rodzina / family: skalnicowate / Saxifragaceae

The Plant Journal - 67 (2-3), 2011

The Plant Journal - 67 (2), 2011


Contents:

FEATURED ARTICLE


Cryptochrome 1 and phytochrome B control shade-avoidance responses in Arabidopsis via partially independent hormonal cascades (pages 195–207)

Mercedes M. Keller, Yvon Jaillais, Ullas V. Pedmale, Javier E. Moreno, Joanne Chory and Carlos L. Ballaré


Blue-light-mediated shade avoidance requires combined auxin and brassinosteroid action in Arabidopsis seedlings (pages 208–217)

Diederik H. Keuskamp, Rashmi Sasidharan, Irene Vos, Anton J. M. Peeters, Laurentius A. C. J. Voesenek and Ronald Pierik


ORIGINAL ARTICLES


The microRNA miR393 re-directs secondary metabolite biosynthesis away from camalexin and towards glucosinolates (pages 218–231)

Alexandre Robert-Seilaniantz, Dan MacLean, Yusuke Jikumaru, Lionel Hill, Shinjiro Yamaguchi, Yuji Kamiya and Jonathan D. G. Jones


Profiling of short RNAs during fleshy fruit development reveals stage-specific sRNAome expression patterns (pages 232–246)

Irina Mohorianu, Frank Schwach, Runchun Jing, Sara Lopez-Gomollon, Simon Moxon, Gyorgy Szittya, Karim Sorefan, Vincent Moulton and Tamas Dalmay


Malate transport by the vacuolar AtALMT6 channel in guard cells is subject to multiple regulation (pages 247–257)

Stefan Meyer, Joachim Scholz-Starke, Alexis De Angeli, Peter Kovermann, Bo Burla, Franco Gambale and Enrico Martinoia


Arabidopsis MAP Kinase Phosphatase 1 (AtMKP1) negatively regulates MPK6-mediated PAMP responses and resistance against bacteria (pages 258–268)

Jeffrey C. Anderson, Sebastian Bartels, Marina A. González Besteiro, Bationa Shahollari, Roman Ulm and Scott C. Peck


ICE1 Ser403 is necessary for protein stabilization and regulation of cold signaling and tolerance (pages 269–279)

Kenji Miura, Masaru Ohta, Machiko Nakazawa, Michiyuki Ono and Paul M. Hasegawa


Members of the RKD transcription factor family induce an egg cell-like gene expression program (pages 280–291)

Dávid Kőszegi, Amal J. Johnston, Twan Rutten, Andreas Czihal, Lothar Altschmied, Jochen Kumlehn, Samuel E. J. Wüst, Olga Kirioukhova, Jacqueline Gheyselinck, Ueli Grossniklaus and Helmut Bäumlein


Deep sequencing of small RNAs specifically associated with Arabidopsis AGO1 and AGO4 uncovers new AGO functions (pages 292–304)

Huan Wang, Xiuren Zhang, Jun Liu, Takatoshi Kiba, Jongchan Woo, Tolulope Ojo, Markus Hafner, Thomas Tuschl, Nam-Hai Chua and Xiu-Jie Wang


Micro-collinearity and genome evolution in the vicinity of an ethylene receptor gene of cultivated diploid and allotetraploid coffee species (Coffea) (pages 305–317)

Qingyi Yu, Romain Guyot, Alexandre de Kochko, Anne Byers, Rafael Navajas-Pérez, Brennick J. Langston, Christine Dubreuil-Tranchant, Andrew H. Paterson, Valérie Poncet, Chifumi Nagai and Ray Ming


PROTON GRADIENT REGULATION 3 recognizes multiple targets with limited similarity and mediates translation and RNA stabilization in plastids (pages 318–327)

Wenhe Cai, Kenji Okuda, Lianwei Peng and Toshiharu Shikanai


OVATE FAMILY PROTEIN4 (OFP4) interaction with KNAT7 regulates secondary cell wall formation in Arabidopsis thaliana (pages 328–341)

Eryang Li, Shucai Wang, Yuanyuan Liu, Jin-Gui Chen and Carl J. Douglas


Two Arabidopsis cytochrome P450 monooxygenases, CYP714A1 and CYP714A2, function redundantly in plant development through gibberellin deactivation (pages 342–353)

Yingying Zhang, Baichen Zhang, Dawei Yan, Weixin Dong, Weibing Yang, Qun Li, Longjun Zeng, Jianjun Wang, Linyou Wang, Leslie M. Hicks and Zuhua He


Metabolomics reveals comprehensive reprogramming involving two independent metabolic responses of Arabidopsis to UV-B light (pages 354–369)

Miyako Kusano, Takayuki Tohge, Atsushi Fukushima, Makoto Kobayashi, Naomi Hayashi, Hitomi Otsuki, Youichi Kondou, Hiroto Goto, Mika Kawashima, Fumio Matsuda, Rie Niida, Minami Matsui, Kazuki Saito and Alisdair R. Fernie


Assigning DYW-type PPR proteins to RNA editing sites in the funariid mosses Physcomitrella patens and Funaria hygrometrica (pages 370–380)

Mareike Rüdinger, Péter Szövényi, Stefan A. Rensing and Volker Knoop


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The Plant Journal - 67 (3), 2011


Contents:

ORIGINAL ARTICLES


Mutational analysis of Arabidopsis chloroplast polynucleotide phosphorylase reveals roles for both RNase PH core domains in polyadenylation, RNA 3'-end maturation and intron degradation (pages 381–394)

Arnaud Germain, Shira Herlich, Shirley Larom, Sang Hu Kim, Gadi Schuster and David B. Stern


Control of root hair development in Arabidopsis thaliana by an endoplasmic reticulum anchored member of the R2R3-MYB transcription factor family (pages 395–405)

Erin Slabaugh, Michael Held and Federica Brandizzi


TRANSPARENT TESTA1 interacts with R2R3-MYB factors and affects early and late steps of flavonoid biosynthesis in the endothelium of Arabidopsis thaliana seeds (pages 406–419)

Ingo Appelhagen, Gui-Hua Lu, Gunnar Huep, Elmon Schmelzer, Bernd Weisshaar and Martin Sagasser


GMI1, a structural-maintenance-of-chromosomes-hinge domain-containing protein, is involved in somatic homologous recombination in Arabidopsis (pages 420–433)

Gudrun Böhmdorfer, Alexander Schleiffer, Reinhard Brunmeir, Stefan Ferscha, Viktoria Nizhynska, Jaroslav Kozák, Karel J. Angelis, David P. Kreil and Dieter Schweizer


Expression of rice SUB1A and SUB1C transcription factors in Arabidopsis uncovers flowering inhibition as a submergence tolerance mechanism (pages 434–446)

Julián M. Pena-Castro, Martijn van Zanten, Seung C. Lee, Mohini R. Patel, Laurentius A. J. C. Voesenek, Takeshi Fukao and Julia Bailey-Serres


Antagonistic role of 9-lipoxygenase-derived oxylipins and ethylene in the control of oxidative stress, lipid peroxidation and plant defence (pages 447–458)

Miguel A. López, Jorge Vicente, Satish Kulasekaran, Tamara Vellosillo, Marta Martínez, Maria L. Irigoyen, Tomas Cascón, Gerard Bannenberg, Mats Hamberg and Carmen Castresana


The receptor-like kinase SlSERK1 is required for Mi-1-mediated resistance to potato aphids in tomato (pages 459–471)

Sophie Mantelin, Hsuan-Chieh Peng, Beibei Li, Hagop S. Atamian, Frank L. W. Takken and Isgouhi Kaloshian


The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling (pages 472–484)

Yuka Kitomi, Hiroko Ito, Tokunori Hobo, Koichiro Aya, Hidemi Kitano and Yoshiaki Inukai


A mitochondrial GABA permease connects the GABA shunt and the TCA cycle, and is essential for normal carbon metabolism (pages 485–498)

Simon Michaeli, Aaron Fait, Kelly Lagor, Adriano Nunes-Nesi, Nicole Grillich, Ayelet Yellin, Dana Bar, Munziba Khan, Alisdair R. Fernie, Frank J. Turano and Hillel Fromm


A NAC domain protein family contributing to the regulation of wood formation in poplar (pages 499–512)

Misato Ohtani, Nobuyuki Nishikubo, Bo Xu, Masatoshi Yamaguchi, Nobutaka Mitsuda, Nadia Goué, Fusun Shi, Masaru Ohme-Takagi and Taku Demura


FEATURED ARTICLE


Computational analysis of storage synthesis in developing Brassica napus L. (oilseed rape) embryos: flux variability analysis in relation to 13C metabolic flux analysis (pages 513–525)

Jordan Hay and Jörg Schwender


TECHNICAL ADVANCE


Metabolic network reconstruction and flux variability analysis of storage synthesis in developing oilseed rape (Brassica napus L.) embryos (pages 526–541)

Jordan Hay and Jörg Schwender


Quantitative analysis of dynamic protein–protein interactions in planta by a floated-leaf luciferase complementation imaging (FLuCI) assay using binary Gateway vectors (pages 542–553)

Christian Gehl, David Kaufholdt, Domenica Hamisch, Rolf Bikker, Jörg Kudla, Ralf R. Mendel and Robert Hänsch


Source verification of mis-identified Arabidopsis thaliana accessions (pages 554–566)

Alison E. Anastasio, Alexander Platt, Matthew Horton, Erich Grotewold, Randy Scholl, Justin O. Borevitz, Magnus Nordborg and Joy Bergelson


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Plant Biology - 14 (1-2,suppl. 1), 2012

Plant Biology - 14 (1), 2012



Contents:


REVIEW ARTICLE


Ecological aspects of plant selenium hyperaccumulation (pages 1–10)

A. F. El Mehdawi and E. A. H. Pilon-Smits


RESEARCH PAPERS


Evolution of the YABBY gene family with emphasis on the basal eudicot Eschscholzia californica (Papaveraceae) (pages 11–23)

C. Bartholmes, O. Hidalgo and S. Gleissberg


Expression characteristics of ARF1 and SAR1 during development and the de-etiolation process (pages 24–32)

B. Cevher Keskin, E. Yuca, Ö. Ertekin, B. Yüksel and A. R. Memon


Histochemical screening, metabolite profiling and expression analysis reveal Rosaceae roots as the site of flavan-3-ol biosynthesis (pages 33–40)

T. Hoffmann, R. Friedlhuber, C. Steinhauser, I. Tittel, K. Skowranek, W. Schwab and T. C. Fischer


Phosphatidylinositol 4-phosphate is associated to extracellular lipoproteic fractions and is detected in tomato apoplastic fluids (pages 41–49)

G. Gonorazky, A. M. Laxalt, H. L. Dekker, M. Rep, T. Munnik, C. Testerink and L. de la Canal


Different strategies of Lotus japonicus, L. corniculatus and L. tenuis to deal with complete submergence at seedling stage (pages 50–55)

G. G. Striker, R. F. Izaguirre, M. E. Manzur and A. A. Grimoldi


Analysis of the subcellular localisation of lipoxygenase in legume and actinorhizal nodules (pages 56–63)

K. Demchenko, A. Zdyb, I. Feussner and K. Pawlowski


Reactive oxygen species are involved in pollen tube initiation in kiwifruit (pages 64–76)

A. Speranza, R. Crinelli, V. Scoccianti and A. Geitmann


Interchangeable effects of gibberellic acid and temperature on embryo growth, seed germination and epicotyl emergence in Ribes multiflorum ssp. sandalioticum (Grossulariaceae) (pages 77–87)

E. Mattana, H. W. Pritchard, M. Porceddu, W. H. Stuppy and G. Bacchetta


Photosynthetic acclimation to light in woody and herbaceous species: a comparison of leaf structure, pigment content and chlorophyll fluorescence characteristics measured in the field (pages 88–99)

L. Hallik, Ü. Niinemets and O. Kull


Distinct modes of adventitious rooting in Arabidopsis thaliana (pages 100–109)

L. da Rocha Correa, J. Troleis, A. A. Mastroberti, J. E. A. Mariath and A. G. Fett-Neto


60Co-? radiation induces differential acetylation and phosphorylation of histones H3 and H4 in wheat (pages 110–117)

V. V. Raut and J. K. Sainis


Spatio-temporal heterogeneity in Arabidopsis thaliana leaves under drought stress (pages 118–128)

I. Sperdouli and M. Moustakas


Multivariate analyses of salt stress and metabolite sensing in auto- and heterotroph Chenopodium cell suspensions (pages 129–141)

C. Wongchai, A. Chaidee and W. Pfeiffer


No evidence for depletion of carbohydrate pools in Scots pine (Pinus sylvestris L.) under drought stress (pages 142–148)

A. Gruber, D. Pirkebner, C. Florian and W. Oberhuber


Plastidic isoprenoid biosynthesis in tomato: physiological and molecular analysis in genotypes resistant and sensitive to drought stress (pages 149–156)

J. Loyola, I. Verdugo, E. González, J. A. Casaretto and S. Ruiz-Lara


Germination, survival and growth of three vascular plants on biological soil crusts from a Mexican tropical desert (pages 157–162)

H. Godínez-Alvarez, C. Morín and V. Rivera-Aguilar


Litter effects on seedling establishment interact with seed position and earthworm activity (pages 163–170)

T. W. Donath and R. L. Eckstein


Pollen:ovule ratio and its relationship with other floral traits in Papilionoideae (Leguminosae): an evaluation with Argentine species (pages 171–178)

A. V. Etcheverry, M. M. Alemán, T. Figueroa-Fleming, D. López-Spahr, C. A. Gómez, C. Yánez, D. M. Figueroa-Castro and P. Ortega-Baes


Prediction of flowering time in Brassica oleracea using a quantitative trait loci-based phenology model (pages 179–189)

R. Uptmoor, J. Li, T. Schrag and H. Stützel


Floral ontogeny of Ruteae (Rutaceae) and its systematic implications (pages 190–197)

L. Wei, Y.-Z. Wang and Z.-Y. Li


Aspects of reproductive ecology of Clusia valerioi Standl. and Clusia peninsulae Hammel (sp. nov.), two Central American species of Clusiaceae with resin flowers (pages 198–207)

H. Hochwallner, S. Vogel, W. Huber, B. E. Hammel and A. Weber


Phenotypic plasticity to light of two congeneric trees from contrasting habitats: Brazilian Atlantic Forest versus cerrado (savanna) (pages 208–215)

F. de V. Barros, M. F. Goulart, S. B. Sá Telles, M. B. Lovato, F. Valladares and J. P. de Lemos-Filho


Hormonal control of endoreduplication in sugar beet (Beta vulgaris L.) seedlings growing in vitro (pages 216–222)

E. Lukaszewska, R. Virden and E. Sliwinska


Meiotic abnormalities underlying pollen sterility in wild potato hybrids and spontaneous populations (pages 223–233)

F. H. Larrosa, J. F. Maune, L. E. Erazzú and E. L. Camadro


The development of pistillate and perfect florets in Xeranthemum squarrosum (Asteraceae) (pages 234–243)

M. R. Dadpour, S. Naghiloo and S. Faridi Neycharan


SHORT RESEARCH PAPERS


Identification of the abscisic acid receptor VvPYL1 in Vitis vinifera (pages 244–248)

G. Li, H. Xin, X. F. Zheng, S. Li and Z. Hu


Decreased structural defence of an invasive thistle under warming (pages 249–252)

R. Zhang, A. Leshak and K. Shea


Genome sizes for all genera of Cycadales (pages 253–256)

B. J. M. Zonneveld



==============

Plant Biology - 14 (supplement 1), 2012



Contents:

Plant-Pathogen Interactions


Unravelling intimacies between plants and their enemies (pages iii–iv)

Saskia C. M. van Wees


Review Article

Genomic advances will herald new insights into the Brassica: Leptosphaeria maculans pathosystem (pages 1–10)

A. Hayward, J. McLanders, E. Campbell, D. Edwards and J. Batley


Research Papers

Correlation of cytological and biochemical parameters with resistance and tolerance to Mycosphaerella graminicola in wheat (pages 11–21)

L. El Chartouni, B. Randoux, F. Duyme, D. Renard-Merlier, B. Tisserant, N. Bourdon, V. Pillon, J. Sanssené, R. Durand, Ph. Reignault and P. Halama


Polygalacturonase-inhibiting proteins – leucine-rich repeat proteins in plant defence (pages 22–30)

A. Maulik, A. I. Sarkar, S. Devi and S. Basu


Transgenic expression of polygalacturonase-inhibiting proteins in Arabidopsis and wheat increases resistance to the flower pathogen Fusarium graminearum (pages 31–38)

S. Ferrari, L. Sella, M. Janni, G. De Lorenzo, F. Favaron and R. D’Ovidio


Overexpression of arginase in Arabidopsis thaliana influences defence responses against Botrytis cinerea (pages 39–45)

S. Brauc, E. De Vooght, M. Claeys, J. M. C. Geuns, M. Höfte and G. Angenon


Malus hupehensis NPR1 induces pathogenesis-related protein gene expression in transgenic tobacco (pages 46–56)

J.-Y. Zhang, Y.-S. Qiao, D. Lv, Z.-H. Gao, S.-C. Qu and Z. Zhang


Manipulation of VOC emissions with methyl jasmonate and carrageenan in the evergreen conifer Pinus sylvestris and evergreen broadleaf Quercus ilex (pages 57–65)

G. Semiz, J. D. Blande, J. Heijari, K. Işik, Ü. Niinemets and J. K. Holopainen


Effects of phosphorus availability and genetic variation of leaf terpene content and emission rate in Pinus pinaster seedlings susceptible and resistant to the pine weevil, Hylobius abietis (pages 66–72)

J.-S. Blanch, L. Sampedro, J. Llusia, X. Moreira, R. Zas and J. Penuelas


Comparing systemic defence-related gene expression changes upon migratory and sedentary nematode attack in rice (pages 73–82)

T. Kyndt, K. Nahar, A. Haegeman, D. De Vleesschauwer, M. Höfte and G. Gheysen


Rhizobacteria modify plant–aphid interactions: a case of induced systemic susceptibility (pages 83–90)

A. Pineda, S. -J. Zheng, J. J. A. van Loon and M. Dicke


==============
Plant Biology - 14 (2), 2012



Contents:

RESEARCH PAPERS

Vegetative reproduction capacities of floodplain willows – cutting response to competition and biomass loss (pages 257–264)

A. Radtke, E. Mosner and I. Leyer


Physical connection decreases benefits of clonal integration in Alternanthera philoxeroides under three warming scenarios (pages 265–270)

J.-J. Li, P.-H. Peng and W.-M. He


Selecting predictors for discriminant analysis of species performance: an example from an amphibious softwater plant (pages 271–277)

F. Vanderhaeghe, A. J. P. Smolders, J. G. M. Roelofs and M. Hoffmann


Rapid floral senescence following male function and breeding systems of some tropical orchids (pages 278–284)

M. K. Huda and C. C. Wilcock


Neither protogynous nor obligatory out-crossed: pollination biology and breeding system of the European Red List Fritillaria meleagris L. (Liliaceae) (pages 285–294)

M. Zych and M. Stpiczyńska


Effect of temperature on the progamic phase in high-mountain plants (pages 295–305)

G. Steinacher and J. Wagner


Why does needle photosynthesis decline with tree height in Norway spruce? (pages 306–314)

O. Räim, E. Kaurilind, L. Hallik and E. Merilo


Manipulation of monoubiquitin improves salt tolerance in transgenic tobacco (pages 315–324)

J. Zhang, Q. F. Guo, Y. N. Feng, F. Li, J. F. Gong, Z. Y. Fan and W. Wang


Vacuoles release sucrose via tonoplast-localised SUC4-type transporters (pages 325–336)

S. Schneider, S. Hulpke, A. Schulz, I. Yaron, J. Höll, A. Imlau, B. Schmitt, S. Batz, S. Wolf, R. Hedrich and N. Sauer


Abscisic acid-regulated responses of aba2-1 under osmotic stress: the abscisic acid-inducible antioxidant defence system and reactive oxygen species production (pages 337–346)

C. Ozfidan, I. Turkan, A. H. Sekmen and B. Seckin


Common and distinct responses in phytohormone and vitamin E changes during seed burial and dormancy in Xyris bialata and X. peregrina (pages 347–353)

Q. S. Garcia, V. T. Giorni, M. Müller and S. Munné-Bosch


The relative effect of citral on mitotic microtubules in wheat roots and BY2 cells (pages 354–364)

D. Chaimovitsh, O. Rogovoy (Stelmakh), O. Altshuler, E. Belausov, M. Abu-Abied, B. Rubin, E. Sadot and N. Dudai


Intron retention regulates the expression of pectin methyl esterase inhibitor (Pmei) genes during wheat growth and development (pages 365–373)

V. Rocchi, M. Janni, D. Bellincampi, T. Giardina and R. D’Ovidio


Differentiation of Populus species using chloroplast single nucleotide polymorphism (SNP) markers – essential for comprehensible and reliable poplar breeding (pages 374–381)

H. Schroeder, A. M. Hoeltken and M. Fladung


Exclusive conservation of mitochondrial group II intron nad4i548 among liverworts and its use for phylogenetic studies in this ancient plant clade (pages 382–391)

U. Volkmar, M. Groth-Malonek, J. Heinrichs, H. Muhle, M. Polsakiewicz and V. Knoop


SHORT RESEARCH PAPER

Silicon supply modifies C:N:P stoichiometry and growth of Phragmites australis (pages 392–396)

J. Schaller, C. Brackhage, M. O. Gessner, E. Bäuker and E. Gert Dudel


ACKNOWLEDGEMENT

Referees of all Section Editors (pages 397–400)


==============

New Phytologist - 189 (1-4), 2011

New Phytologist - 189 (1), 2011




Contents:

Broad-spectrum plant science
Ian Woodward, F.; Slater, Holly

Knowing when not to grow
Bielenberg, Douglas G.

Solving the conundrum of plant species coexistence: water in space and time matters most
Penuelas, Josep; Terradas, Jaume; Lloret, Francisco

The nexus of host and pathogen phenology: understanding the disease triangle with climate change
Grulke, Nancy E.

MODIS Enhanced Vegetation Index data do not show greening of Amazon forests during the 2005 drought
Samanta, Arindam; Ganguly, Sangram; Myneni, Ranga B.

Epidermis: the formation and functions of a fundamental plant tissue
Javelle, Marie; Vernoud, Vanessa; Rogowsky, Peter M.; Ingram, Gwyneth C.

Annexins
Laohavisit, Anuphon; Davies, Julia M.

Sodium transport in plants: a critical review
Kronzucker, Herbert J.; Britto, Dev T.

SGT1 contributes to coronatine signaling and Pseudomonas syringae pv. tomato disease symptom development in tomato and Arabidopsis
Uppalapati, Srinivasa Rao; Ishiga, Yasuhiro; Ryu, Choong-Min; Ishiga, Takako; Wang, Keri; Noël, Laurent D.; Parker, Jane E.; Mysore, Kirankumar S.

Floret initiation, tissue expansion and carbon availability at the meristem of the sunflower capitulum as affected by water or light deficits
Dosio, Guillermo A. A.; Tardieu, François; Turc, Olivier

Bud set in popular - genetic dissection of a complex trait in natural and hybrid populations
Rohde, Antje; Storme, Véronique; Jorge, Véronique; Gaudet, Muriel; Vitacolonna, Nicola; Fabbrini, Francesco; Ruttink, Tom; Zaina, Giusi; Marron, Nicolas; Dillen, Sophie; Steenackers, Marijke; Sabatti, Maurizio; Morgante, Michele; Boerjan, Wout; Bastien, Catherine

Growth-mediated stress escape: convergence of signal transduction pathways activated upon exposure to two different environmental stresses
Pierik, Ronald; de Wit, Mieke; Voesenek, Laurentius A. C. J.

Early response of plant cell to carbon deprivation: in vivo31P-NMR spectroscopy shows a quasi-instantaneous disruption on cytosolic sugars, phosphorylated intermediates of energy metabolism, phosphate partitioning, and intracellular pHs
Gout, Elisabeth; Bligny, Richard; Douce, Roland; Boisson, Anne-Marie; Rivasseau, Corinne

A seed high-lysine trait is negatively associated with the TCA cycle and slows down Arabidopsis seed germination
Angelovici, Ruthie; Fait, Aaron; Fernie, Alisdair R.; Galili, Gad

Functional characterization of Arabidopsis thaliana isopropylmalate dehydrogenases reveals their important roles in gametophyte development
He, Yan; Chen, Liqun; Zhou, Yuan; Mawhinney, Thomas P.; Chen, Bing; Kang, Byung-Ho; Hauser, Bernard A.; Chen, Sixue

Dissection of the phytohormonal regulation of trichome formation and biosynthesis of the antimalarial compound artemisinin in
Maes, Lies; Van Nieuwerburgh, Filip C. W.; Zhang, Yansheng; Reed, Darwin W.; Pollier, Jacob; Vande Casteele, Sofie R. F.; Inzé, Dirk; Covello, Patrick S.; Deforce, Dieter L. D.; Goossens, Alain

OsHMA3, a P1B-type of ATPase affects root-to-shoot cadmium translocation in rice by mediating efflux into vacuoles
Miyadate, Hidenori; Adachi, Saki; Hiraizumi, Aya; Tezuka, Kouichi; Nakazawa, Nobushige; Kawamoto, Tomohiko; Katou, Kazunao; Kodama, Ikuko; Sakurai, Kenji; Takahashi, Hidekazu; Satoh-Nagasawa, Namiko; Watanabe, Akio; Fujimura, Tatsuhito; Akagi, Hiromori

Spatial distribution of arsenic and temporal variation of its concentration in rice
Zheng, Mao-Zhong; Cai, Chao; Hu, Ying; Sun, Guo-Xin; Williams, Paul N.; Cui, Hao-Jie; Li, Gang; Zhao, Fang-Jie; Zhu, Yong-Guan

Mannitol permeation and radial flow of water in maize roots
Fritz, Michael; Ehwald, Rudolf

Do quantitative vessel and pit characters account for ion-mediated changes in the hydraulic conductance of angiosperm xylem?
Jansen, Steven; Gortan, Emmanuelle; Lens, Frederic; Lo Gullo, Maria Assunta; Salleo, Sebastiano; Scholz, Alexander; Stein, Anke; Trifilo, Patrizia; Nardini, Andrea

A hydraulic explanation for size-specific plant shrinkage: developmental hydraulic sectoriality
Salguero-Gómez, Roberto; Casper, Brenda B.

Hydraulic constraints limit height growth in trees at high altitude
Petit, Giai; Anfodillo, Tommaso; Carraro, Vinicio; Grani, Francesco; Carrer, Marco

A fundamental, eco-hydrological basis for niche segregation in plant communities
Araya, Yoseph N.; Silvertown, Jonathan; Gowing, David J.; McConway, Kevin J.; Peter Linder, H.; Midgley, Guy

Intraspecific trait variation and covariation in a widespread tree species (Nothofagus pumilio) in southern Chile
Fajardo, Alex; Piper, Frida I.

Contrasting impacts of climate-driven flowering phenology on changes in alien and native plant species distributions
Hulme, Philip E.

Arabidopsis thaliana populations show clinal variation in a climatic gradient associated with altitude
Montesinos-Navarro, Alicia; Wig, Jennifer; Xavier Pico, F.; Tonsor, Stephen J.

Physiological performance of an Alaskan shrub (Alnus fruticosa) in response to disease (Valsa melanodiscus) and water stress
Rohrs-Richey, Jennifer K.; Mulder, Christa P. H.; Winton, Loretta M.; Stanosz, Glen

The role of abscisic acid and water stress in root herbivore-induced leaf resistance
Erb, Matthias; Köllner, Tobias G.; Degenhardt, Jörg; Zwahlen, Claudia; Hibbard, Bruce E.; Turlings, Ted C. J.

The isolation and characterization of Pik, a rice blast resistance gene which emerged after rice domestication
Zhai, Chun; Lin, Fei; Dong, Zhongqiu; He, Xiuying; Yuan, Bin; Zeng, Xiaoshan; Wang, Ling; Pan, Qinghua

Role of lupeol synthase in Lotus japonicus nodule formation (pages 335–346)
Delis, Costas; Krokida, Afrodite; Georgiou, Sofia; Pena-Rodríguez, Luis M.; Kavroulakis, Nektarios; Ioannou, Efstathia; Roussis, Vassilios; Osbourn, Anne E.; Papadopoulou, Kalliope K.

Arbuscular mycorrhizal hyphopodia and germinated spore exudates trigger Ca2+ spiking in the legume and nonlegume root epidermis
Chabaud, Mireille; Genre, Andrea; Sieberer, Björn J.; Faccio, Antonella; Fournier, Joëlle; Novero, Mara; Barker, David G.; Bonfante, Paola


===============

New Phytologist - 189 (2), 2011




Contents:

A challenge for hyperaccumulating plant models: `cycling' as fast as Arabidopsis thaliana
Frérot, Hélene

NO way to treat a cold
Gupta, Kapuganti J.; Hincha, Dirk K.; Mur, Luis A. J.

A new tool for functional genomics in maize
Benavente, Larissa M.; Scofield, Steven R.

Forces that structure plant communities: quantifying the importance of the mycorrhizal symbiosis
Klironomos, John; Zobel, Martin; Tibbett, Mark; Stock, William D.; Rillig, Matthias C.; Parrent, Jeri L.; Moora, Mari; Koch, Alexander M.; Facelli, José M.; Facelli, Evelina; Dickie, Ian A.; Bever, James D.

Plants and the Earth system - past events and future challenges
Coates, Juliet C.; Moody, Laura A.; Saidi, Younousse

Sources of variability in canopy reflectance and the convergent properties of plants
Ollinger, S. V.

Environment-dependent inbreeding depression: its ecological and evolutionary significance
Cheptou, Pierre-Olivier; Donohue, Kathleen

Generation of nonvernal-obligate, faster-cycling Noccaea caerulescens lines through fast neutron mutagenesis
Ó Lochlainn, Seosamh; Fray, Rupert G.; Hammond, John P.; King, Graham J.; White, Philip J.; Young, Scott D.; Broadley, Martin R.

Nitric oxide participates in cold-responsive phosphosphingolipid formation and gene expression in Arabidopsis thaliana
Cantrel, Catherine; Vazquez, Thomas; Puyaubert, Juliette; Rezé, Nathalie; Lesch, Maria; Kaiser, Werner M.; Dutilleul, Christelle; Guillas, Isabelle; Zachowski, Alain; Baudouin, Emmanuel

Stable isotope labelling and zinc distribution in grains studied by laser ablation ICP-MS in an ear culture system reveals zinc transport barriers during grain filling in wheat
Wang, Y. X.; Specht, A.; Horst, W. J.

Improved nitrogen nutrition enhances root uptake, root-to-shoot translocation and remobilization of zinc (65Zn) in wheat
Erenoglu, Emin Bulent; Kutman, Umit Baris; Ceylan, Yasemin; Yildiz, Bahar; Cakmak, Ismail

Haplotype analysis of the genes encoding glutamine synthetase plastic isoforms and their association with nitrogen-use- and yield-related traits in bread wheat
Li, Xin-Peng; Zhao, Xue-Qiang; He, Xue; Zhao, Guang-Yao; Li, Bin; Liu, Dong-Cheng; Zhang, Ai-Min; Zhang, Xue-Yong; Tong, Yi-Ping; Li, Zhen-Sheng

Structural and hydraulic correlates of heterophylly in Ginkgo biloba
Leigh, A.; Zwieniecki, M. A.; Rockwell, F. E.; Boyce, C. K.; Nicotra, A. B.; Holbrook, N. M.

Systemic virus-induced gene silencing allows functional characterization of maize genes during biotrophic interaction with Ustilago maydis
van der Linde, Karina; Kastner, Christine; Kumlehn, Jochen; Kahmann, Regine; Doehlemann, Gunther

The second face of a known player: Arabidopsis silencing suppressor AtXRN4 acts organ-specifically
Vogel, Florian; Hofius, Daniel; Paulus, Kathrin Elisabeth; Jungkunz, Isabel; Sonnewald, Uwe

Host plant secondary metabolite profiling shows a complex, strain-dependent response of maize to plant growth-promoting rhizobacteria of the genus Azospirillum
Walker, Vincent; Bertrand, Cédric; Bellvert, Floriant; Moënne-Loccoz, Yvan; Bally, René; Comte, Gilles

Evidence for functional divergence in arbuscular mycorrhizal fungi from contrasting climatic origins
Antunes, Pedro M.; Koch, Alexander M.; Morton, Joseph B.; Rillig, Matthias C.; Klironomos, John N.

Recovery of ectomycorrhiza after `nitrogen saturation' of a conifer forest
Högberg, Peter; Johannisson, Christian; Yarwood, Stephanie; Callesen, Ingeborg; Näsholm, Torgny; Myrold, David D.; Högberg, Mona N.

Differentiating between effects of invasion and diversity: impacts of aboveground plant communities on belowground fungal communities
Kivlin, Stephanie N.; Hawkes, Christine V.

Resistance and recovery of soil microbial communities in the face of Alliaria petiolata invasions
Lankau, Richard A.

Phylloplane location of glucosinolates in Barbarea spp. (Brassicaceae) and misleading assessment of host suitability by a specialist herbivore
Badenes-Pérez, Francisco Rubén; Reichelt, Michael; Gershenzon, Jonathan; Heckel, David G.

Ecological trade-offs between jasmonic acid-dependent direct and indirect plant defences in tritrophic interactions
Wei, Jianing; Wang, Lizhong; Zhao, Jiuhai; Li, Chuanyou; Ge, Feng; Kang, Le

Jasmonate biosynthesis in legume and actinorhizal nodules
Zdyb, Anna; Demchenko, Kirill; Heumann, Jan; Mrosk, Cornelia; Grzeganek, Peter; Göbel, Cornelia; Feussner, Ivo; Pawlowski, Katharina; Hause, Bettina

A Medicago truncatula NADPH oxidase is involved in symbiotic nodule functioning
Marino, Daniel; Andrio, Emilie; Danchin, Etienne G. J.; Oger, Elodie; Gucciardo, Sébastien; Lambert, Annie; Puppo, Alain; Pauly, Nicolas

Association between nonsynonymous mutations of starch synthase IIa and starch quality in rice (Oryza sativa)
Yu, Guoqin; Olsen, Kenneth M.; Schaal, Barbara A.

The molecular basis for venation patterning of pigmentation and its effect on pollinator attraction in flowers of Antirrhinum
Shang, Yongjin; Venail, Julien; Mackay, Steve; Bailey, Paul C.; Schwinn, Kathy E.; Jameson, Paula E.; Martin, Cathie R.; Davies, Kevin M.

Possible contributions of TERMINAL FLOWER 1 to the evolution of rosette flowering in Leavenworthia (Brassicaceae)
Liu, Ning; Sliwinski, Marek K.; Correa, Raul; Baum, David A.

High homologous gene conservation despite extreme autopolyploid redundancy in sugarcane
Garsmeur, Olivier; Charron, Carine; Bocs, Stéphanie; Jouffe, Vincent; Samain, Sylvie; Couloux, Arnaud; Droc, Gaëtan; Zini, Cyrille; Glaszmann, Jean-Christophe; Van Sluys, Marie-Anne; D'Hont, Angélique

Corrigendum

Erratum


==============

New Phytologist - 189 (3), 2011




Contents:

Unearthing the truffle genome
Martin, Francis

Multifunctional fungal plant symbionts: new tools to enhance plant growth and productivity
Harman, Gary E.

Trait divergence and the ecosystem impacts of invading species
Cleland, Elsa E.

Effect of segregation and genetic exchange on arbuscular mycorrhizal fungi in colonization of roots
Angelard, Caroline; Sanders, Ian R.

Steps towards a mechanistic understanding of respiratory temperature responses
Kruse, Jörg; Rennenberg, Heinz; Adams, Mark A.

Innate immunity: has poplar made its BED?
Germain, Hugo; Séguin, Armand

Truffle volatiles: from chemical ecology to aroma biosynthesis
Splivallo, Richard; Ottonello, Simone; Mello, Antonietta; Karlovsky, Petr

Genetic evidence for auxin involvement in arbuscular mycorrhiza initiation
Hanlon, Meredith T.; Coenen, Catharina

Isolation and characterization of MAT genes in the symbiotic ascomycete Tuber melanosporum
Rubini, Andrea; Belfiori, Beatrice; Riccioni, Claudia; Tisserant, Emilie; Arcioni, Sergio; Martin, Francis; Paolocci, Francesco

Tuber melanosporum: mating type distribution in a natural plantation and dynamics of strains of different mating types on the roots of nursery-inoculated host plants
Rubini, Andrea; Belfiori, Beatrice; Riccioni, Claudia; Arcioni, Sergio; Martin, Francis; Paolocci, Francesco

Genome-wide search and functional identification of transcription factors in the mycorrhizal fungus Tuber melanosporum
Montanini, Barbara; Levati, Elisabetta; Bolchi, Angelo; Kohler, Annegret; Morin, Emmanuelle; Tisserant, Emilie; Martin, Francis; Ottonello, Simone

Genomic profiling of carbohydrate metabolism in the ectomycorrhizal fungus Tuber melanosporum
Ceccaroli, P.; Buffalini, M.; Saltarelli, R.; Barbieri, E.; Polidori, E.; Ottonello, S.; Kohler, A.; Tisserant, E.; Martin, F.; Stocchi, V.

Regulation of nonsymbiotic and truncated hemoglobin genes of Lotus japonicus in plant organs and in response to nitric oxide and hormones
Bustos-Sanmamed, Pilar; Tovar-Méndez, Alejandro; Crespi, Martin; Sato, Shusei; Tabata, Satoshi; Becana, Manuel

Functional characterization of a plant-like sucrose transporter from the beneficial fungus Trichoderma virens. Regulation of the symbiotic association with plants by sucrose metabolism inside the fungal cells
Vargas, Walter A.; Crutcher, Frankie K.; Kenerley, Charles M.

The degree of mycoheterotrophic carbon gain in green, variegated and vegetative albino individuals of Cephalanthera damasonium is related to leaf chlorophyll concentrations
Stöckel, Marcus; Meyer, Cornelia; Gebauer, Gerhard

Effects of multiple climate change factors on the tall fescue-fungal endophyte symbiosis: infection frequency and tissue chemistry
Brosi, Glade B.; McCulley, Rebecca L.; Bush, Lowell P.; Nelson, Jim A.; Classen, Aimée T.; Norby, Richard J.

Whole-system responses of experimental plant communities to climate extremes imposed in different seasons
De Boeck, Hans J.; Dreesen, Freja E.; Janssens, Ivan A.; Nijs, Ivan

Invasive forbs differ functionally from native graminoids, but are similar to native forbs
Scharfy, Deborah; Funk, Andrea; Olde Venterink, Harry; Güsewell, Sabine

Relationship between gibberellin, ethylene and nodulation in Pisum sativum
Ferguson, Brett J.; Foo, Eloise; Ross, John J.; Reid, James B.

Identification of a novel mitochondrial protein, short postembryonic roots 1 (SPR1), involved in root development and iron homeostasis in Oryza sativa
Jia, Liqiang; Wu, Zhongchang; Hao, Xi; Carrie, Chris; Zheng, Libin; Whelan, James; Wu, Yunrong; Wang, Shoufeng; Wu, Ping; Mao, Chuanzao

A K+ channel from salt-tolerant melon inhibited by Na+
Zhang, Yi-Dong; Véry, Anne-Aliénor; Wang, Li-Min; Deng, Yang-Wu; Sentenac, Hervé; Huang, Dan-Feng

Rice SIZ1, a SUMO E3 ligase, controls spikelet fertility through regulation of anther dehiscence
Thangasamy, Saminathan; Guo, Cian-Ling; Chuang, Ming-Hsiang; Lai, Ming-Hsing; Chen, Jychian; Jauh, Guang-Yuh

Deep RNA sequencing improved the structural annotation of the Tuber melanosporum transcriptome
Tisserant, E.; Da Silva, C.; Kohler, A.; Morin, E.; Wincker, P.; Martin, F.

==============

New Phytologist - 189 (4), 2011




Contents:

Carbon cycling in tropical ecosystems
Norby, Richard J.

Seeing the forest for the trees: statistical phylogeography in a changing world
Eckert, Andrew J.

Sensing microtubule states through the mitogen-activated protein kinase pathway during mitosis and morphogenesis
Bogre, Laszlo

Heterosis: one boat at a time, or a rising tide?
Kaeppler, Shawn

No change without a cause - why climate change remains the most plausible reason for shrub growth dynamics in Scandinavia
Hallinger, Martin; Wilmking, Martin

Association genetics of complex traits in plants
Ingvarsson, Pär K.; Street, Nathaniel R.

A unifying theory for general multigenic heterosis: energy efficiency, protein metabolism, and implications for molecular breeding
Goff, Stephen A.

The biophysical design of plant cuticles: an overview
Domínguez, Eva; Heredia-Guerrero, José Alejandro; Heredia, Antonio

Leaf traits and decomposition in tropical rainforests: revisiting some commonly held views and towards a new hypothesis
Hättenschwiler, Stephan; Coq, Sylvain; Barantal, Sandra; Handa, Ira Tanya

The sensitivity of tropical leaf litter decomposition to temperature: results from a large-scale leaf translocation experiment along an elevation gradient in Peruvian forests
Salinas, N.; Malhi, Y.; Meir, P.; Silman, M.; Roman Cuesta, R.; Huaman, J.; Salinas, D.; Huaman, V.; Gibaja, A.; Mamani, M.; Farfan, F.

Can we predict carbon stocks in tropical ecosystems from tree diversity? Comparing species and functional diversity in a plantation and a natural forest
Ruiz-Jaen, Maria C.; Potvin, Catherine

Global vegetation and terrestrial carbon cycle changes after the last ice age
Prentice, I. C.; Harrison, S. P.; Bartlein, P. J.

Canopy phylogenetic, chemical and spectral assembly in a lowland Amazonian forest
Asner, Gregory P.; Martin, Roberta E.

In the heat of the night - alternative pathway respiration drives thermogenesis in Philodendron bipinnatifidum
Miller, Rebecca E.; Grant, Nicole M.; Giles, Larry; Ribas-Carbo, Miquel; Berry, Joseph A.; Watling, Jennifer R.; Robinson, Sharon A.

Leaf respiration and alternative oxidase in field-grown alpine grasses respond to natural changes in temperature and light
Searle, Stephanie Y.; Thomas, Samuel; Griffin, Kevin L.; Horton, Travis; Kornfeld, Ari; Yakir, Dan; Hurry, Vaughan; Turnbull, Matthew H.

Responses of ecosystem nitrogen cycle to nitrogen addition: a meta-analysis
Lu, Meng; Yang, Yuanhe; Luo, Yiqi; Fang, Changming; Zhou, Xuhui; Chen, Jiakuan; Yang, Xin; Li, Bo

Water quality as a threat to aquatic plants: discriminating between the effects of nitrate, phosphate, boron and heavy metals on charophytes
Lambert, Stephen J.; Davy, Anthony J.

Reciprocal regulation of Ca2+-activated outward K+ channels of Pyrus pyrifolia pollen by heme and carbon monoxide
Wu, Ju-You; Qu, Hai-Yong; Shang, Zhong-Lin; Tao, Shu-Tian; Xu, Guo-Hua; Wu, Jun; Wu, Hua-Qing; Zhang, Shao-Ling

Mitogen-activated protein kinase 4 is involved in the regulation of mitotic and cytokinetic microtubule transitions in Arabidopsis thaliana
Beck, Martina; Komis, George; Ziemann, Anja; Menzel, Diedrik; Šamaj, Jozef

Ethylene signalling is involved in regulation of phosphate starvation-induced gene expression and production of acid phosphatases and anthocyanin in Arabidopsis
Lei, Mingguang; Zhu, Chuanmei; Liu, Yidan; Karthikeyan, Athikkattuvalasu S.; Bressan, Ray A.; Raghothama, Kashchandra G.; Liu, Dong

Reduced wood stiffness and strength, and altered stem form, in young antisense 4CL transgenic poplars with reduced lignin contents
Voelker, Steven L.; Lachenbruch, Barbara; Meinzer, Frederick C.; Strauss, Steven H.

Separating multiple, short-term, deleterious effects of saline solutions on the growth of cowpea seedlings
Kopittke, Peter M.; Blamey, F. Pax C.; Kinraide, Thomas B.; Wang, Peng; Reichman, Suzie M.; Menzies, Neal W.

SOS3 mediates lateral root development under low salt stress through regulation of auxin redistribution and maxima in Arabidopsis
Zhao, Yankun; Wang, Tao; Zhang, Wensheng; Li, Xia

Kin recognition, not competitive interactions, predicts root allocation in young Cakile edentula seedling pairs
Bhatt, Mudra V.; Khandelwal, Aditi; Dudley, Susan A.

SGT1 regulates wounding- and herbivory-induced jasmonic acid accumulation and Nicotiana attenuata's resistance to the specialist lepidopteran herbivore Manduca sexta
Meldau, Stefan; Baldwin, Ian T.; Wu, Jianqiang

Identification of two conserved cis-acting elements, MYCS and P1BS, involved in the regulation of mycorrhiza-activated phosphate transporters in eudicot species
Chen, Aiqun; Gu, Mian; Sun, Shubin; Zhu, Lingling; Hong, Shuai; Xu, Guohua

The rice acyl-CoA-binding protein gene family: phylogeny, expression and functional analysis
Meng, Wei; Su, Yvonne C. F.; Saunders, Richard M. K.; Chye, Mee-Len

Southward Pleistocene migration of Douglas-fir into Mexico: phylogeography, ecological niche modeling, and conservation of `rear edge' populations
Gugger, Paul F.; González-Rodríguez, Antonio; Rodríguez-Correa, Hernando; Sugita, Shinya; Cavender-Bares, Jeannine

The relative importance of factors determining genetic drift: mating system, spatial genetic structure, habitat and census size in Arabidopsis lyrata
Willi, Yvonne; Määttänen, Kirsti

==============

Monographiae Botanicae - 101, 2011

Contents:

Małgorzata Stasińska:
Macrofungi of raised and transitional bogs of Pomerania.

1. Introduction
2. Study area
4. Results. Macroscopic fungi in peatland communities of Pomerania
4.1. Macromycetes in non-forest peatland communities
4.2. Macromycetes in forest peatland communities
4.3. Bioecological groups of fungi and peatland communities
4.4. Macromycetes of peatland communities: a comparative analysis
4.5. Mycological similarity of the phytocoenoses
4.6. Mycological differentiation of the phytocoenoses
4.7. The influence of selected environmental factors on the occurrence of fungi
4.8. Geographic and ecological analysis of selected species of peatland fungi in Pomerania
5. Results review and discussion
5.1. Macromycetes of peatland communities: Pomerania and other regions in Poland
5.2. Indicator value of macroscopic fungi in peatland communities
5.3. The role of fungi in peatland communities
5.4. Environmental factors and macromycete diversity in peatland phytocoenoses
6. Summary of results and conclusions
7. References
8. Grzyby makroskopowe torfowisk wysokich i przejściowych Pomorza (streszczenie)
Appendix 1. Vegetation and macroscopic fungi at the research plots
Appendix 2. A list of macromycete species of raised and transitional bogs in Pomerania
Appendix 3. Cartogram maps of distribution of macroscopic fungi of raised and transitional bogs in Pomerania

===================

Multequina - 20, 2011

Contents:

Oscar Damiani y Alejandro García
El manejo indígena del agua en San Juan (Argentina): diseno y funcionamiento del sistema de canales de zonda.
Indigenous management of water in San Juan province ( Argentina ): design and operation of zonda channels system.

Flora de Mendoza

Flora Urbana

Campanula portenschlagiana 'Catharina' / Dzwonek dalmatyński 'Catharina'

Journal de Botanique - 53-54, 2011

====

Journal de Botanique - 53, 2011




Contents:

A. BLANQUER
Contribution de John Stuart Mill a la Flore du Vaucluse

S. BLAISE
Architecture inflorescentielle de quelques Myosotis d’Europe occidentale

M. LARIBI, M. ACHERAR, J. MATHEZ & A. DERRIDJ
Découverte de Rhynchocorys elephas (L.) Griseb. dans l’Akfadou (Grande Kabylie, Algérie) : premiere mention pour l'Afrique du Nord

B. DESCOINGS
Contribution a l’étude des Vitacées d’Amérique tropicale. IV – Cissus erosa, C. sicyoides et C. ulmifolia

G. PARADIS & C. PIAZZA
Compléments a la connaissance de la répartition en Corse de Vitex agnus-castus L.

B. DE FOUCAULT
Contribution au prodrome des végétations de France : les Filipendulo ulmariae – Convolvuletea sepium Géhu & Géhu-Franck 1987

M. TORT
François Billy (1920-2010)



----------------
Journal de Botanique - 54, 2011




Contents:

M. CHARBONNIER & J. VALLADE
De l’embryon a la racine des Angiospermes : approche ontophylogénétique

A. STURBOIS & F. BIORET
Réflexions sur la gestion durable d’une ressource végétale terrestre sauvage exploitée a des fins économiques : l’exemple de la Criste marine (Crithmum maritimum L.) sur les littoraux de Bretagne et de Corse

G. PARADIS & R. MINICONI
Une nouvelle espece aquatique invasive découverte en Corse, au sud du golfe d’Ajaccio : Salvinia molesta D.S.Mitch. (Salviniaceae, Pteridophyta)

F. HARDY
Le Carici divisae – Trisetetum flavescentis, association végétale nouvelle de prairie mésohygrophile a mésophile du systeme subhalophile thermo-atlantique dans le centre-ouest de la France (Marais breton, Marais poitevin). Rappel sur les unités synsystématiques des Arrhenatheretea elatioris Braun-Blanq. 1949 nom. nud. et description de l'association

B. DE FOUCAULT
Premiers compléments au Prodrome des végétations de France

ANONYME
Proces verbal de la séance du 24 septembre 2010

ANONYME
Proces verbal de la séance du 5 novembre 2010

ANONYME
Proces verbal de la séance du 21 janvier 2011


---------------

Genome Biology and Evolution - 3, 2011

Contents:


Shigehiro Kuraku and Shigeru Kuratani
Genome-Wide Detection of Gene Extinction in Early Mammalian Evolution

Alexander Neef, Amparo Latorre, Juli Peretó, Francisco J. Silva, Miguel Pignatelli, and Andrés Moya
Genome Economization in the Endosymbiont of the Wood Roach Cryptocercus punctulatus Due to Drastic Loss of Amino Acid Synthesis Capabilities

Shao-Lun Liu, Gregory J. Baute, and Keith L. Adams
Organ and Cell Type–Specific Complementary Expression Patterns and Regulatory Neofunctionalization between Duplicated Genes in Arabidopsis thaliana

Weilong Hao, Jennifer H. Ma, Keisha Warren, Raymond S.W. Tsang, Donald E. Low, Frances B. Jamieson, and David C. Alexander
Extensive Genomic Variation within Clonal Complexes of Neisseria meningitidis

David Managadze, Igor B. Rogozin, Diana Chernikova, Svetlana A. Shabalina, and Eugene V. Koonin
Negative Correlation between Expression Level and Evolutionary Rate of Long Intergenic Noncoding RNAs

Axel Künstner, Benoit Nabholz, and Hans Ellegren
Significant Selective Constraint at 4-Fold Degenerate Sites in the Avian Genome and Its Consequence for Detection of Positive Selection

Melissa A. Toups, James B. Pease, and Matthew W. Hahn
No Excess Gene Movement Is Detected off the Avian or Lepidopteran Z Chromosome

Corey M. Hudson, Emily E. Puckett, Michaël Bekaert, J. Chris Pires, and Gavin C. Conant
Selection for Higher Gene Copy Number after Different Types of Plant Gene Duplications

Hiroaki Sakai, Hiroshi Mizuno, Yoshihiro Kawahara, Hironobu Wakimoto, Hiroshi Ikawa, Hiroyuki Kawahigashi, Hiroyuki Kanamori, Takashi Matsumoto, Takeshi Itoh, and Brandon S. Gaut
Retrogenes in Rice (Oryza sativa L. ssp. japonica) Exhibit Correlated Expression with Their Source Genes

James R. Doroghazi and Daniel H. Buckley
A Model for the Effect of Homologous Recombination on Microbial Diversification

Bojian Zhong, Oliver Deusch, Vadim V. Goremykin, David Penny, Patrick J. Biggs, Robin A. Atherton, Svetlana V. Nikiforova, and Peter James Lockhart
Systematic Error in Seed Plant Phylogenomics

Danielle Venton
Highlight: The Degenerating Y Chromosome: Under the Pressures of Sex and Selection

Vera B. Kaiser, Qi Zhou, and Doris Bachtrog
Nonrandom Gene Loss from the Drosophila miranda Neo-Y Chromosome

Seth M. Bybee, Heather Bracken-Grissom, Benjamin D. Haynes, Russell A. Hermansen, Robert L. Byers, Mark J. Clement, Joshua A. Udall, Edward R. Wilcox, and Keith A. Crandall
Targeted Amplicon Sequencing (TAS): A Scalable Next-Gen Approach to Multilocus, Multitaxa Phylogenetics

Tomasz Żemojtel, Szymon M. Kiełbasa, Peter F. Arndt, Sarah Behrens, Guillaume Bourque, and Martin Vingron
CpG Deamination Creates Transcription Factor–Binding Sites with High Efficiency

Chung-Shien Wu, Ya-Nan Wang, Chi-Yao Hsu, Ching-Ping Lin, and Shu-Miaw Chaw
Loss of Different Inverted Repeat Copies from the Chloroplast Genomes of Pinaceae and Cupressophytes and Influence of Heterotachy on the Evaluation of Gymnosperm Phylogeny

Shunsuke Suzuki, Geoffrey Shaw, Tomoko Kaneko-Ishino, Fumitoshi Ishino, and Marilyn B. Renfree
The Evolution of Mammalian Genomic Imprinting Was Accompanied by the Acquisition of Novel CpG Islands

Ofir Cohen and Tal Pupko
Inference of Gain and Loss Events from Phyletic Patterns Using Stochastic Mapping and Maximum Parsimony—A Simulation Study

Damien J. Fleetwood, Anar K. Khan, Richard D. Johnson, Carolyn A. Young, Shipra Mittal, Ruth E. Wrenn, Uljana Hesse, Simon J. Foster, Christopher L. Schardl, and Barry Scott
Abundant Degenerate Miniature Inverted-Repeat Transposable Elements in Genomes of Epichloid Fungal Endophytes of Grasses

Benjamin A. Wilson and Joanna Masel
Putatively Noncoding Transcripts Show Extensive Association with Ribosomes

Yasuhiro Kitazoe, Hirohisa Kishino, Masami Hasegawa, Atsushi Matsui, Nick Lane, and Masashi Tanaka
Stability of Mitochondrial Membrane Proteins in Terrestrial Vertebrates Predicts Aerobic Capacity and Longevity

Danielle Venton
Highlight: Stability of Mitochondrial Membrane Proteins in Terrestrial Vertebrates Predicts Aerobic Capacity and Longevity

Christian Woehle, Tal Dagan, William F. Martin, and Sven B. Gould
Red and Problematic Green Phylogenetic Signals among Thousands of Nuclear Genes from the Photosynthetic and Apicomplexa-Related Chromera velia

Tanja Slotte, Thomas Bataillon, Troels T. Hansen, Kate St. Onge, Stephen I. Wright, and Mikkel H. Schierup
Genomic Determinants of Protein Evolution and Polymorphism in Arabidopsis
Genome Biol Evol (2011) Vol. 3 1210-1219 first published online September 16, 2011 doi:10.1093/gbe/evr094

Anke Konrad, Ashley I. Teufel, Johan A. Grahnen, and David A. Liberles
Toward a General Model for the Evolutionary Dynamics of Gene Duplicates

Stephen P. Moss, Domino A. Joyce, Stuart Humphries, Katherine J. Tindall, and David H. Lunt
Comparative Analysis of Teleost Genome Sequences Reveals an Ancient Intron Size Expansion in the Zebrafish Lineage

Nicolas Cerveau, Sébastien Leclercq, Elodie Leroy, Didier Bouchon, and Richard Cordaux
Short- and Long-term Evolutionary Dynamics of Bacterial Insertion Sequences: Insights from Wolbachia Endosymbionts

Alex J. McCarthy, Adam A. Witney, Katherine A. Gould, Arshnee Moodley, Luca Guardabassi, Andreas Voss, Olivier Denis, Els M. Broens, Jason Hinds, and Jodi A. Lindsay
The Distribution of Mobile Genetic Elements (MGEs) in MRSA CC398 Is Associated with Both Host and Country

Nathaniel M. Hallinan and David R. Lindberg
Comparative Analysis of Chromosome Counts Infers Three Paleopolyploidies in the Mollusca

Hye-Ran Lee, Karen E. Hayden, and Huntington F. Willard
Organization and Molecular Evolution of CENP-A–Associated Satellite DNA Families in a Basal Primate Genome

Kiyoshi Ezawa, Kazuho Ikeo, Takashi Gojobori, and Naruya Saitou
Evolutionary Patterns of Recently Emerged Animal Duplogs

Michael Lynch
The Lower Bound to the Evolution of Mutation Rates

Hiroki Goto, Oliver A. Ryder, Allison R. Fisher, Bryant Schultz, Sergei L. Kosakovsky Pond, Anton Nekrutenko, and Kateryna D. Makova
A Massively Parallel Sequencing Approach Uncovers Ancient Origins and High Genetic Variability of Endangered Przewalski's Horses

Danielle Venton
Highlight: A Massively Parallel Sequencing Approach Uncovers Ancient Origins and High Genetic Variability of Endangered Przewalski’s Horses

Georgii A. Bazykin and Alexey S. Kondrashov
Detecting Past Positive Selection through Ongoing Negative Selection

Ricard Albalat, Frédéric Brunet, Vincent Laudet, and Michael Schubert
Evolution of Retinoid and Steroid Signaling: Vertebrate Diversification from an Amphioxus Perspective

Matthew K. Fujita, Scott V. Edwards, and Chris P. Ponting
The Anolis Lizard Genome: An Amniote Genome without Isochores

Nicholas Delihas
Impact of Small Repeat Sequences on Bacterial Genome Evolution

Hua Ying and Gavin Huttley
Exploiting CpG Hypermutability to Identify Phenotypically Significant Variation Within Human Protein-Coding Genes

Lisa G. McFerrin and William R. Atchley
Evolution of the Max and Mlx Networks in Animals

Leonardo Arbiza, Mateus Patricio, Hernán Dopazo, and David Posada
Genome-Wide Heterogeneity of Nucleotide Substitution Model Fit

Deborah C. Holt, Matthew T.G. Holden, Steven Y.C. Tong, Santiago Castillo-Ramirez, Louise Clarke, Michael A. Quail, Bart J. Currie, Julian Parkhill, Stephen D. Bentley, Edward J. Feil, and Philip M. Giffard
A Very Early-Branching Staphylococcus aureus Lineage Lacking the Carotenoid Pigment Staphyloxanthin

Suo Qiu, Kai Zeng, Tanja Slotte, Stephen Wright, and Deborah Charlesworth
Reduced Efficacy of Natural Selection on Codon Usage Bias in Selfing Arabidopsis and Capsella Species

Sébastien Verne, Barry Jaquish, Rick White, Carol Ritland, and Kermit Ritland
Global Transcriptome Analysis of Constitutive Resistance to the White Pine Weevil in Spruce

Philip L. F. Johnson and Ines Hellmann
Mutation Rate Distribution Inferred from Coincident SNPs and Coincident Substitutions

Laurie S. Stevison, Kenneth B. Hoehn, and Mohamed A. F. Noor
Effects of Inversions on Within- and Between-Species Recombination and Divergence

Masatoshi Nei and Masafumi Nozawa
Roles of Mutation and Selection in Speciation: From Hugo de Vries to the Modern Genomic Era

Gregory I. Lang and Andrew W. Murray
Mutation Rates across Budding Yeast Chromosome VI Are Correlated with Replication Timing

Jessica L. Crisci, Alex Wong, Jeffrey M. Good, and Jeffrey D. Jensen
On Characterizing Adaptive Events Unique to Modern Humans

David Alvarez-Ponce and James O. McInerney
The Human Genome Retains Relics of Its Prokaryotic Ancestry: Human Genes of Archaebacterial and Eubacterial Origin Exhibit Remarkable Differences

Florent Lassalle, Tony Campillo, Ludovic Vial, Jessica Baude, Denis Costechareyre, David Chapulliot, Malek Shams, Danis Abrouk, Céline Lavire, Christine Oger-Desfeux, Florence Hommais, Laurent Guéguen, Vincent Daubin, Daniel Muller, and Xavier Nesme
Genomic Species Are Ecological Species as Revealed by Comparative Genomics in Agrobacterium tumefaciens

Yedael Y. Waldman, Tamir Tuller, Alon Keinan, and Eytan Ruppin
Selection for Translation Efficiency on Synonymous Polymorphisms in Recent Human Evolution

David Roy Smith
Extending the Limited Transfer Window Hypothesis to Inter-organelle DNA Migration

A. Darracq, J. S. Varré, L. Maréchal-Drouard, A. Courseaux, V. Castric, P. Saumitou-Laprade, S. Oztas, P. Lenoble, B. Vacherie, V. Barbe, and P. Touzet
Structural and Content Diversity of Mitochondrial Genome in Beet: A Comparative Genomic Analysis

Richard Jovelin and Patrick C. Phillips
Expression Level Drives the Pattern of Selective Constraints along the Insulin/Tor Signal Transduction Pathway in Caenorhabditis

Naruo Nikoh, Takahiro Hosokawa, Kenshiro Oshima, Masahira Hattori, and Takema Fukatsu
Reductive Evolution of Bacterial Genome in Insect Gut Environment

Jeffrey D. Jensen and Doris Bachtrog
Characterizing the Influence of Effective Population Size on the Rate of Adaptation: Gillespie’s Darwin Domain

Sabrina N. Trojet, Anne Caumont-Sarcos, Elsa Perrody, André M. Comeau, and H. M. Krisch
The gp38 Adhesins of the T4 Superfamily: A Complex Modular Determinant of the Phage’s Host Specificity

Maria Warnefors and Adam Eyre-Walker
The Accumulation of Gene Regulation Through Time

Eric S. Ho and Samuel I. Gunderson
Long Conserved Fragments Upstream of Mammalian Polyadenylation Sites

Todd A. Castoe, Kathryn T. Hall, Marcel L. Guibotsy Mboulas, Wanjun Gu, A.P. Jason de Koning, Samuel E. Fox, Alexander W. Poole, Vijetha Vemulapalli, Juan M. Daza, Todd Mockler, Eric N. Smith, Cédric Feschotte, and David D. Pollock
Discovery of Highly Divergent Repeat Landscapes in Snake Genomes Using High-Throughput Sequencing

Alvina G. Lai, Matthew Denton-Giles, Bernd Mueller-Roeber, Jos H. M. Schippers, and Paul P. Dijkwel
Positional Information Resolves Structural Variations and Uncovers an Evolutionarily Divergent Genetic Locus in Accessions of Arabidopsis thaliana

Sol Katzman, John A. Capra, David Haussler, and Katherine S. Pollard
Ongoing GC-Biased Evolution Is Widespread in the Human Genome and Enriched Near Recombination Hot Spots

Scott R. Miller, A.Michelle Wood, Robert E. Blankenship, Maria Kim, and Steven Ferriera
Dynamics of Gene Duplication in the Genomes of Chlorophyll d-Producing Cyanobacteria: Implications for the Ecological Niche

Federico G. Hoffmann, Juan C. Opazo, and Jay F. Storz
Differential Loss and Retention of Cytoglobin, Myoglobin, and Globin-E during the Radiation of Vertebrates

Jessica W. Leigh, François-Joseph Lapointe, Philippe Lopez, and Eric Bapteste
Evaluating Phylogenetic Congruence in the Post-Genomic Era

Manuel Irimia, Ignacio Maeso, Demián Burguera, Matías Hidalgo-Sánchez, Luis Puelles, Scott W. Roy, Jordi Garcia-Fernandez, and José Luis Ferran
Contrasting 5' and 3' Evolutionary Histories and Frequent Evolutionary Convergence in Meis/hth Gene Structures

Wilfried Haerty and G. Brian Golding
Increased Polymorphism Near Low-Complexity Sequences across the Genomes of Plasmodium falciparum Isolates

Robert Piskol and Wolfgang Stephan
The Role of the Effective Population Size in Compensatory Evolution

John A. Capra and Katherine S. Pollard
Substitution Patterns Are GC-Biased in Divergent Sequences across the Metazoans

Jean-Simon Brouard, Christian Otis, Claude Lemieux, and Monique Turmel
The Chloroplast Genome of the Green Alga Schizomeris leibleinii (Chlorophyceae) Provides Evidence for Bidirectional DNA Replication from a Single Origin in the Chaetophorales

James R. Walters and Thomas J. Hardcastle
Getting a Full Dose? Reconsidering Sex Chromosome Dosage Compensation in the Silkworm, Bombyx mori

Filipe G. Vieira and Julio Rozas
Comparative Genomics of the Odorant-Binding and Chemosensory Protein Gene Families across the Arthropoda: Origin and Evolutionary History of the Chemosensory System

Mary M. Rorick and Günter P. Wagner
Protein Structural Modularity and Robustness Are Associated with Evolvability

Laura Baldo, M.Emília Santos, and Walter Salzburger
Comparative Transcriptomics of Eastern African Cichlid Fishes Shows Signs of Positive Selection and a Large Contribution of Untranslated Regions to Genetic Diversity

Wataru Kai, Kiyoshi Kikuchi, Sumanty Tohari, Ah Keng Chew, Alice Tay, Atushi Fujiwara, Sho Hosoya, Hiroaki Suetake, Kiyoshi Naruse, Sydney Brenner, Yuzuru Suzuki, and Byrappa Venkatesh
Integration of the Genetic Map and Genome Assembly of Fugu Facilitates Insights into Distinct Features of Genome Evolution in Teleosts and Mammals

Xiuwei Zhang, Martin Kupiec, Uri Gophna, and Tamir Tuller
Analysis of Coevolving Gene Families Using Mutually Exclusive Orthologous Modules

Seong Hwan Park, Ondrej Podlaha, Wendy E. Grus, and Jianzhi Zhang
The Microevolution of V1r Vomeronasal Receptor Genes in Mice

David S. Lawrie, Dmitri A. Petrov, and Philipp W. Messer
Faster than Neutral Evolution of Constrained Sequences: The Complex Interplay of Mutational Biases and Weak Selection

Daniel Moog, Simone Stork, Stefan Zauner, and Uwe-G. Maier
In Silico and In Vivo Investigations of Proteins of a Minimized Eukaryotic Cytoplasm

Julia Hecht, Felix Grewe, and Volker Knoop
Extreme RNA Editing in Coding Islands and Abundant Microsatellites in Repeat Sequences of Selaginella moellendorffii Mitochondria: The Root of Frequent Plant mtDNA Recombination in Early Tracheophytes

C. A. Whittle, Y. Sun, and H. Johannesson
Evolution of Synonymous Codon Usage in Neurospora tetrasperma and Neurospora discreta

Guang-Zhong Wang, Martin J. Lercher, and Laurence D. Hurst
Transcriptional Coupling of Neighboring Genes and Gene Expression Noise: Evidence that Gene Orientation and Noncoding Transcripts Are Modulators of Noise

Chung-Shien Wu, Ching-Ping Lin, Chi-Yao Hsu, Rui-Jiang Wang, and Shu-Miaw Chaw
Comparative Chloroplast Genomes of Pinaceae: Insights into the Mechanism of Diversified Genomic Organizations

Huifeng Jiang, Lin Xu, and Zhenglong Gu
Growth of Novel Epistatic Interactions by Gene Duplication

Inaho Danjoh, Kaoru Saijo, Takashi Hiroyama, and Yukio Nakamura
The Sonoda–Tajima Cell Collection: A Human Genetics Research Resource with Emphasis on South American Indigenous Populations

Daudi Jjingo, Ahsan Huda, Madhumati Gundapuneni, Leonardo Marino-Ramírez, and I. King Jordan
Effect of the Transposable Element Environment of Human Genes on Gene Length and Expression

Cécile Ané
Detecting Phylogenetic Breakpoints and Discordance from Genome-Wide Alignments for Species Tree Reconstruction

Yves Clément and Peter F. Arndt
Substitution Patterns Are Under Different Influences in Primates and Rodents

Maud I. Tenaillon, Matthew B. Hufford, Brandon S. Gaut, and Jeffrey Ross-Ibarra
Genome Size and Transposable Element Content as Determined by High-Throughput Sequencing in Maize and Zea luxurians

Bethany N. Kent, Leonidas Salichos, John G. Gibbons, Antonis Rokas, Irene L. G. Newton, Michael E. Clark, and Seth R. Bordenstein
Complete Bacteriophage Transfer in a Bacterial Endosymbiont (Wolbachia) Determined by Targeted Genome Capture

Gaelen R. Burke and Nancy A. Moran
Massive Genomic Decay in Serratia symbiotica, a Recently Evolved Symbiont of Aphids

Tina Koestler and Ingo Ebersberger
Zygomycetes, Microsporidia, and the Evolutionary Ancestry of Sex Determination

Haruo Suzuki, Tristan Lefébure, Melissa Jane Hubisz, Paulina Pavinski Bitar, Ping Lang, Adam Siepel, and Michael J. Stanhope
Comparative Genomic Analysis of the Streptococcus dysgalactiae Species Group: Gene Content, Molecular Adaptation, and Promoter Evolution

Takeshi Kawakami, Preeti Dhakal, Angela N. Katterhenry, Chelsea A. Heatherington, and Mark C. Ungerer
Transposable Element Proliferation and Genome Expansion Are Rare in Contemporary Sunflower Hybrid Populations Despite Widespread Transcriptional Activity of LTR Retrotransposons

Tim Connallon and Andrew G. Clark
Association between Sex-Biased Gene Expression and Mutations with Sex-Specific Phenotypic Consequences in Drosophila

Gregor Felsner, Maik S. Sommer, Nicole Gruenheit, Franziska Hempel, Daniel Moog, Stefan Zauner, William Martin, and Uwe G. Maier
ERAD Components in Organisms with Complex Red Plastids Suggest Recruitment of a Preexisting Protein Transport Pathway for the Periplastid Membrane

Sayaka Miura, Masafumi Nozawa, and Masatoshi Nei
Evolutionary Changes of the Target Sites of Two MicroRNAs Encoded in the Hox Gene Cluster of Drosophila and Other Insect Species

Peter Andolfatto, Karen M. Wong, and Doris Bachtrog
Effective Population Size and the Efficacy of Selection on the X Chromosomes of Two Closely Related Drosophila Species

D.E. Janes, C. Chapus, Y. Gondo, D.F. Clayton, S. Sinha, C.A. Blatti, C.L. Organ, M.K. Fujita, C.N. Balakrishnan, and S.V. Edwards
Reptiles and Mammals Have Differentially Retained Long Conserved Noncoding Sequences from the Amniote Ancestor

David Alvarez-Ponce, Montserrat Aguadé, and Julio Rozas
Comparative Genomics of the Vertebrate Insulin/TOR Signal Transduction Pathway: A Network-Level Analysis of Selective Pressures

Robert M. Waterhouse, Evgeny M. Zdobnov, and Evgenia V. Kriventseva
Correlating Traits of Gene Retention, Sequence Divergence, Duplicability and Essentiality in Vertebrates, Arthropods, and Fungi

Ken Daigoro Yokoyama, Jeffrey L. Thorne, and Gregory A. Wray
Coordinated Genome-Wide Modifications within Proximal Promoter Cis-regulatory Elements during Vertebrate Evolution

Yong-Hwee E. Loh, Soojin V. Yi, and J.Todd Streelman
Evolution of MicroRNAs and the Diversification of Species

Goro Tanifuji, Natalie Donaher, Marlena Dlutek, Travis J. Wheeler,Naoko T. Onodera, and John M. Archibald
Complete Nucleomorph Genome Sequence of the Nonphotosynthetic Alga Cryptomonas paramecium Reveals a Core Nucleomorph Gene Set

Daniel H. Huson and Celine Scornavacca
A Survey of Combinatorial Methods for Phylogenetic Networks

Peter A. Novick, Mark Floumanhaft, Jeremy D. Smith, David A. Ray, and Stéphane Boissinot
The Evolution and Diversity of DNA Transposons in the Genome of the Lizard Anolis carolinensis

Special Collection

Bill Martin and Takashi Gojobori
Introduction to the Special Series

Werner Arber
Molecular Darwinism: The Contingency of Spontaneous Genetic Variation

Stilianos Arhondakis, Fabio Auletta, and Giorgio Bernardi
Isochores and the Regulation of Gene Expression in the Human Genome

S. Castellana, S. Vicario, and C. Saccone
Evolutionary Patterns of the Mitochondrial Genome in Metazoa: Exploring the Role of Mutation and Selection in Mitochondrial Protein–Coding Genes

Walter J. Gehring
Chance and Necessity in Eye Evolution

Eviatar Nevo
Evolution Under Environmental Stress at Macro- and Microscales

Tomoko Ohta
Near-Neutrality, Robustness, and Epigenetics

Agnes Ullmann
In Memoriam: Jacques Monod (1910–1976)

Jun Zhou, Erik B. Dopman, Bernardo Lemos, and Daniel L. Hartl
Copy-Number Variation: The Balance between Gene Dosage and Expression in Drosophila melanogaster

Genome Reports

Maria D. Logacheva, Mikhail I. Schelkunov, and Aleksey A. Penin
Sequencing and Analysis of Plastid Genome in Mycoheterotrophic Orchid Neottia nidus-avis

Philippe Colson, Svetlana A. Shabalina, Ghislain Fournous, Bernard La Scola, Catherine Robert, Didier Raoult, Natalya Yutin, and Eugene V. Koonin
Viruses with More Than 1,000 Genes: Mamavirus, a New Acanthamoeba polyphaga mimivirus Strain, and Reannotation of Mimivirus Genes

Isabelle C. Arnold, Zuzana Zigova, Matthew Holden, Trevor D. Lawley, Roland Rad, Gordon Dougan, Stanley Falkow, Stephen D. Bentley, and Anne Müller
Comparative Whole Genome Sequence Analysis of the Carcinogenic Bacterial Model Pathogen Helicobacter felis

Letters

Sankar Subramanian and David M. Lambert
Time Dependency of Molecular Evolutionary Rates? Yes and No

Sébastien Halary, Shehre-Banoo Malik, Claudio H. Slamovits, Levannia Lildhar, Mohamed Hijri, and Nicolas Corradi
Conserved Meiotic Machinery in Glomus spp., a Putatively Ancient Asexual Fungal Lineage

Lin Xu, Huifeng Jiang, Hong Chen, and Zhenglong Gu
Genetic Architecture of Growth Traits Revealed by Global Epistatic Interactions

Guang-Zhong Wang, Wei-Hua Chen, and Martin J. Lercher
Coexpression of Linked Gene Pairs Persists Long after Their Separation

Dong-Dong Wu, David M. Irwin, and Ya-Ping Zhang
Correlated Evolution among Six Gene Families in Drosophila Revealed by Parallel Change of Gene Numbers

Nick Lane
Plastids, Genomes, and the Probability of Gene Transfer

David Roy Smith, Kate Crosby, and Robert W. Lee
Correlation between Nuclear Plastid DNA Abundance and Plastid Number Supports the Limited Transfer Window Hypothesis

Luděk Kořený and Miroslav Oborník
Sequence Evidence for the Presence of Two Tetrapyrrole Pathways in Euglena gracilis

Graeme J. Roch and Nancy M. Sherwood
Stanniocalcin Has Deep Evolutionary Roots in Eukaryotes

Beatriz Vicoso and Doris Bachtrog
Lack of Global Dosage Compensation in Schistosoma mansoni, a Female-Heterogametic Parasite

Allison M. Churcher and John S. Taylor
The Antiquity of Chordate Odorant Receptors Is Revealed by the Discovery of Orthologs in the Cnidarian Nematostella vectensis

Gregory A. Babbitt and C. R. Cotter
Functional Conservation of Nucleosome Formation Selectively Biases Presumably Neutral Molecular Variation in Yeast Genomes

Editorials

John M. Archibald
Treasurer's Report for FY 2009

Society for Molecular Biology and Evolution (SMBE) Council and Business Meetings, 2010, Lyon, France

Bill Martin and Takashi Gojobori
GBE Editor's Report

Editorial Board

Genome Biology and Evolution



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