Contents:
Letters
Adam M. Reitzel and Ann M. Tarrant
Correlated Evolution of Androgen Receptor and Aromatase Revisited
Karri M. Haen, Walker Pett and Dennis V. Lavrov
Parallel Loss of Nuclear-Encoded Mitochondrial Aminoacyl-tRNA Synthetases and mtDNA-Encoded tRNAs in Cnidaria
Research Articles
Boris Malyarchuk, Miroslava Derenko, Galina Denisova and Olga Kravtsova
Mitogenomic Diversity in Tatars from the Volga-Ural Region of Russia
Ming Chen, Zhongyang Tan, Guangming Zeng and Jun Peng
Comprehensive Analysis of Simple Sequence Repeats in Pre-miRNAs
Kosuke Fujishima, Junichi Sugahara, Masaru Tomita and Akio Kanai
Large-Scale tRNA Intron Transposition in the Archaeal Order Thermoproteales Represents a Novel Mechanism of Intron Gain
David Roy Smith and Robert W. Lee
Low Nucleotide Diversity for the Expanded Organelle and Nuclear Genomes of Volvox carteri Supports the Mutational-Hazard Hypothesis
William Fletcher and Ziheng Yang
The Effect of Insertions, Deletions, and Alignment Errors on the Branch-Site Test of Positive Selection
Sarah M. McDonald, Joshua N. Plant and Alexandra Z. Worden
The Mixed Lineage Nature of Nitrogen Transport and Assimilation in Marine Eukaryotic Phytoplankton: A Case Study of Micromonas
Punita Juneja and Brian P. Lazzaro
Haplotype Structure and Expression Divergence at the Drosophila Cellular Immune Gene eater
Alexey Aleshin and Degui Zhi
Recombination-Associated Sequence Homogenization of Neighboring Alu Elements: Signature of Nonallelic Gene Conversion
Alon Keinan and David Reich
Can a Sex-Biased Human Demography Account for the Reduced Effective Population Size of Chromosome X in Non-Africans?
Deborah I. Ritter, Qiang Li, Dennis Kostka, Katherine S. Pollard, Su Guo and Jeffrey H. Chuang
The Importance of Being Cis: Evolution of Orthologous Fish and Mammalian Enhancer Activity
Sabyasachi Das, Nikolas Nikolaidis, Hiroki Goto, Chelsea McCallister, Jianxu Li, Masayuki Hirano and Max D. Cooper
Comparative Genomics and Evolution of the Alpha-Defensin Multigene Family in Primates
Lynette Isabella Ochola, Kevin K. A. Tetteh, Lindsay B. Stewart, Victor Riitho, Kevin Marsh and David J. Conway
Allele Frequency–Based and Polymorphism-Versus-Divergence Indices of Balancing Selection in a New Filtered Set of Polymorphic Genes in Plasmodium falciparum
Xinjiang Cai and Sandip Patel
Degeneration of an Intracellular Ion Channel in the Primate Lineage by Relaxation of Selective Constraints
Reto Burri, Nicolas Salamin, Romain A. Studer, Alexandre Roulin and Luca Fumagalli
Adaptive Divergence of Ancient Gene Duplicates in the Avian MHC Class II ß
Christina Toft and Mario A. Fares
Structural Calibration of the Rates of Amino Acid Evolution in a Search for Darwin in Drifting Biological Systems
John F. Mulley and Peter W. H. Holland
Parallel Retention of Pdx2 Genes in Cartilaginous Fish and Coelacanths
Furong Yuan, Gary D. Bernard, Jennifer Le and Adriana D. Briscoe
Contrasting Modes of Evolution of the Visual Pigments in Heliconius Butterflies
Brendan D. O'Fallon
A Method to Correct for the Effects of Purifying Selection on Genealogical Inference
Min-Sheng Peng, Huy Ho Quang, Khoa Pham Dang, An Vu Trieu, Hua-Wei Wang, Yong-Gang Yao, Qing-Peng Kong and Ya-Ping Zhang
Tracing the Austronesian Footprint in Mainland Southeast Asia: A Perspective from Mitochondrial DNA
Jelle Matthijnssens, Elisabeth Heylen, Mark Zeller, Mustafizur Rahman, Philippe Lemey and Marc Van Ranst
Phylodynamic Analyses of Rotavirus Genotypes G9 and G12 Underscore Their Potential for Swift Global Spread
Standing Material
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