BMC Plant Biology - 10, 2010

Contents:

A high-throughput method for the detection of homoeologous gene deletions in hexaploid wheat
Timothy L. Fitzgerald, Kemal Kazan, Zhongyi Li, Matthew K. Morell, John M. Manners

Insight into durum wheat Lpx-B1: a small gene family coding for the lipoxygenase responsible for carotenoid bleaching in mature grains
Angelo Verlotta, Vanessa De Simone, Anna M. Mastrangelo, Luigi Cattivelli, Roberto Papa, Daniela Trono

Common and distinct organ and stress responsive transcriptomic patterns in Oryza sativa and Arabidopsis thaliana
Reena Narsai, Ian Castleden, James Whelan

Comparative genomic analysis of 1047 completely sequenced cDNAs from an Arabidopsis-related model halophyte, Thellungiella halophila
Teruaki Taji, Kenji Komatsu, Taku Katori, Yoshikazu Kawasaki, Yoichi Sakata, Shigeo Tanaka, Masatomo Kobayashi, Atsushi Toyoda, Motoaki Seki, Kazuo Shinozaki

Identification and expression analysis of microRNAs and targets in the biofuel crop sugarcane
Almir S. Zanca, Renato Vicentini, Fausto A. Ortiz-Morea, Luiz E.V. Del Bem, Marcio J. da Silva, Michel Vincentz, Fabio T.S. Nogueira

Does epigenetic polymorphism contribute to phenotypic variances in Jatropha curcas L.?
ChengXin Yi, Shilu Zhang, Xiaokun Liu, Thi Ngoc Ha Bui, Yan Hong

The Hawaiian Rhodophyta Biodiversity Survey (2006-2010): a summary of principal findings
Alison R. Sherwood, Akira Kurihara, Kimberly Y. Conklin, Thomas Sauvage, Gernot G. Presting

Reciprocity between abscisic acid and ethylene at the onset of berry ripening and after harvest
Liang Sun, Mei Zhang, Jie Ren, Jianxun Qi, Guojun Zhang, Ping Leng

Functional divergence of the NIP III subgroup proteins involved altered selective constraints and positive selection
Qingpo Liu, Zhujun Zhu

Phylogenetic relationships in genus Arachis based on ITS and 5.8S rDNA sequences
Marcelo D. Bechara, Marcio C. Moretzsohn, Dario A. Palmieri, Jomar P. Monteiro, Mauricio Bacci Jr, Joaquim Martins Jr, Jose F.M. Valls, Catalina R. Lopes, Marcos A. Gimenes

Genomic evolution and complexity of the Anaphase-promoting Complex (APC) in land plants
Marcelo F. Lima, Nubia B. Eloy, Camila Pegoraro, Rauan Sagit, Cristian Rojas, Thiago Bretz, Livia Vargas, Arne Elofsson, Antonio C. Oliveira, Adriana S. Hemerly, Paulo C.G. Ferreira

Classification of Rice (Oryza sativa L. japonica Nipponbare) Immunophilins (FKBPs, CYPs) and Expression Patterns under Water Stress
Jun Cheul Ahn, Dae-Won Kim, Young Nim You, Min Sook Seok, Jeong Mee Park, Hyunsik Hwang, Beom- Gi Kim, Sheng Luan, Hong-Seog Park, Hye Sun Cho

Integration of deep transcriptome and proteome analyses reveals the components of alkaloid metabolism in opium poppy cell cultures
Isabel Desgagne-Penix, Morgan F. Khan, David C. Schriemer, Dustin Cram, Jacek Nowak, Peter J. Facchini

Functionally relevant microsatellites in sugarcane unigenes
Swarup K. Parida, Awadhesh Pandit, Kishor Gaikwad, Tilak R. Sharma, Prem Shankar Srivastava, Nagendra K. Singh, Trilochan Mohapatra

Mining the Bitter Melon (Momordica charantia L.) Seed Transcriptome by 454 Analysis of Non-Normalized and Normalized cDNA Populations for Conjugated Fatty Acid Metabolism-Related Genes
Peizhen Yang, Xiangjun Li, Matthew J. Shipp, Jay M. Shockey, Edgar B. Cahoon

An in silico analysis of the mitochondrial protein import apparatus of plants
Chris Carrie, Monika W. Murcha, James Whelan

Functional Analysis of the Theobroma cacao NPR1 Gene in Arabidopsis
Zi Shi, Siela N. Maximova, Yi Liu, Joseph Verica, Mark J. Guiltinan

A tritrophic signal that attracts parasitoids to host-damaged plants withstands disruption by non-host herbivores
Matthias Erb, Nicolas Foresti, Ted C.J. Turlings

Sequencing of 6.7 Mb of the melon genome using a BAC pooling strategy
Victor M. Gonzalez, Andrej Benjak, Elizabeth M. Henaff, Gisela Mir, Josep M. Casacuberta, Jordi Garcia-Mas, Pere Puigdomenech

The Vitis vinifera sugar transporter gene family: phylogenetic overview and macroarray expression profiling
Damien Afoufa-Bastien, Anna Medici, Julien Jeauffre, Pierre Coutos-Thevenot, Remi Lemoine, Rossitza Atanassova, Maryse Laloi

Rapid modification of the insect elicitor N-linolenoyl-glutamate via a lipoxygenase-mediated mechanism on Nicotiana attenuata leaves
Arjen VanDoorn, Mario Kallenbach, Alejandro A. Borquez, Ian T. Baldwin, Gustavo Bonaventure

The ascorbic acid content of tomato fruits is associated with the expression of genes involved in pectin degradation
Antonio Di Matteo, Adriana Sacco, Milena Anacleria, Mario Pezzotti, Massimo Delledonne, Alberto Ferrarini, Luigi Frusciante, Amalia Barone

Caspase inhibitors affect the kinetics and dimensions of tracheary elements in xylogenic Zinnia (Zinnia elegans) cell cultures
Peter Twumasi, Elena T. Iakimova, Tian Qian, Wim van Ieperen, Jan H.N. Schel, Anne Mie C. Emons, Olaf van Kooten, Ernst J. Woltering

RoBuST: an integrated genomics resource for the root and bulb crop families Apiaceae and Alliaceae
Ashwini Bhasi, Doug Senalik, Philipp W. Simon, Brajendra Kumar, Vinu Manikandan, Philge Philip, Periannan Senapathy

RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome
Andrew J. Severin, Jenna L. Woody, Yung-Tsi Bolon, Bindu Joseph, Brian W Diers, Andrew D. Farmer, Gary J. Muehlbauer, Rex T. Nelson, David Grant, James E. Specht, Michelle A. Graham, Steven B. Cannon, Gregory D. May, Carroll P. Vance, Randy C. Shoemaker

Characterisation of microRNAs from apple (Malus domestica 'Royal Gala') vascular tissue and phloem sap
Erika Varkonyi-Gasic, Nick Gould, Manoharie Sandanayaka, Paul Sutherland, Robin M MacDiarmid

A SNP associated with alternative splicing of RPT5b causes unequal redundancy between RPT5a and RPT5b among Arabidopsis thaliana natural variation
Anouchka Guyon-Debast, Alain Lécureuil, Sandrine Bonhomme, Philippe Guerche, Jean-Luc Gallois

Identification and structural characterization of FYVE domain-containing proteins of Arabidopsis thaliana
Ewa Wywial, Shaneen M Singh

Structure-function relationships of wheat flavone O-methyltransferase: Homology modeling and site-directed mutagenesis
Jian-Min Zhou, Eunjung Lee, Francesca Kanapathy-Sinnaiaha, Younghee Park, Jack A. Kornblatt, Yoongho Lim, Ragai K. Ibrahim

A new allele of flower color gene W1 encoding flavonoid 3'5'-hydroxylase is responsible for light purple flowers in wild soybean Glycine soja
Ryoji Takahashi, Joseph G. Dubouzet, Hisakazu Matsumura, Kentaro Yasuda, Tsukasa Iwashina

Genetic fine-mapping of DIPLOSPOROUS in Taraxacum (dandelion; Asteraceae) indicates a duplicated DIP-gene
Kitty Vijverberg, Slavica Milanovic-Ivanovic, Tanja Bakx-Schotman, Peter J. van Dijk

Global transcriptome profiling of wild soybean (Glycine soja) roots under NaHCO3 treatment
Ying Ge, Yong Li, Yan-Ming Zhu, Xi Bai, De-Kang Lv, Dianjing Guo, Wei Ji, Hua Cai

Analysis of promoter activity of members of the PECTATE LYASE-LIKE (PLL) gene family in cell separation in Arabidopsis
Lingxia Sun, Steven van Nocker

Brassinosteroid-mediated stress tolerance in Arabidopsis shows interactions with abscisic acid, ethylene and salicylic acid pathways
Uday K. Divi, Tawhidur Rahman, Priti Krishna

Pathway analysis of the transcriptome and metabolome of salt sensitive and tolerant poplar species reveals evolutionary adaption of stress tolerance mechanisms
Dennis Janz, Katja Behnke, Jörg-Peter Schnitzler, Basem Kanawati, Philippe Schmitt-Kopplin, Andrea Polle

Mechanisms of haplotype divergence at the RGA08 nucleotide-binding leucine-rich repeat gene locus in wild banana (Musa balbisiana)
Franc-Christophe Baurens, Stéphanie Bocs, Mathieu Rouard, Takashi Matsumoto, Robert N.G. Miller, Marguerite Rodier-Goud, Didier MBéguié-A-MBéguié, Nabila Yahiaoui

Expression divergence of the AGL6 MADS domain transcription factor lineage after a core eudicot duplication suggests functional diversification
Tom Viaene, Dries Vekemans, Annette Becker, Siegbert Melzer, Koen Geuten

Breakdown of resistance to grapevine downy mildew upon limited deployment of a resistant variety
Elisa Peressotti, Sabine Wiedemann-Merdinoglu, François Delmotte, Diana Bellin, Gabriele Di Gaspero, Raffaele Testolin, Didier Merdinoglu, Pere Mestre

Validation of reference genes as internal control for studying viral infections in cereals by quantitative real-time RT-PCR
Jana Jarošová, Jiban K. Kundu

Comprehensive Analysis of NAC Domain Transcription Factor Gene Family in Populus trichocarpa
Ruibo Hu, Guang Qi, Yingzhen Kong, Dejing Kong, Qian Gao, Gongke Zhou

Increasing the amylose content of durum wheat through silencing of the SBEIIa genes
Francesco Sestili, Michela Janni, Angela Doherty, Ermelinda Botticella, Renato D'Ovidio, Stefania Masci, Huw D. Jones, Domenico Lafiandra

Relationship, evolutionary fate and function of two maize co-orthologs of rice GW2 associated with kernel size and weight
Qing Li, Lin Li, Xiaohong Yang, Marilyn L. Warburton, Guanghong Bai, Jingrui Dai, Jiansheng Li, Jianbing Yan

Identification of the family of aquaporin genes and their expression in upland cotton (Gossypium hirsutum L.)
Wonkeun Park, Brian E. Scheffler, Philip J. Bauer, B. Todd Campbell

The structural and photosynthetic characteristics of the exposed peduncle of wheat (Triticum aestivum L.): an important photosynthate source for grain-filling
Lingan Kong, Fahong Wang, Bo Feng, Shengdong Li, Jisheng Si, Bin Zhang

Identification and characterization of genes associated with tapping panel dryness from Hevea brasiliensis latex using suppression subtractive hybridization
Dejun Li, Zhi Deng, Chunliu Chen, Zhihui Xia, Min Wu, Peng He, Shoucai Chen

Constraints to virus infection in Nicotiana benthamiana plants transformed with a potyvirus amplicon
María Calvo, Gabriela Dujovny, Cristina Lucini, Jesús Ortuno, Josefa M. Alamillo, Carmen Simón-Mateo, Juan José López-Moya, Juan Antonio García

Plant microRNAs and their role in defense against viruses: a bioinformatics approach
Álvaro L. Pérez-Quintero, Rafik Neme, Andrés Zapata, Camilo López

Assessment of FAE1 polymorphisms in three Brassica species using EcoTILLING and their association with differences in seed erucic acid contents
Nian Wang, Lei Shi, Fang Tian, Huicai Ning, Xiaoming Wu, Yan Long, Jinling Meng

Differential expression of maize chitinases in the presence or absence of Trichoderma harzianum strain T22 and indications of a novel exo- endo-heterodimeric chitinase activity
Michal Shoresh, Gary E. Harman

Transcriptional regulation of the grape cytochrome P450 monooxygenase gene CYP736B expression in response to Xylella fastidiosa infection
Davis W. Cheng, Hong Lin, Yuri Takahashi, M. Andrew Walker, Edwin L. Civerolo, Drake C. Stenger

Delineating the structural, functional and evolutionary relationships of sucrose phosphate synthase gene family II in wheat and related grasses
Shailendra Sharma, Nese Sreenivasulu, Vokkaliga Thammegowda Harshavardhan, Christiane Seiler, Shiveta Sharma, Zaynali Nezhad Khalil, Eduard Akhunov, Sunish Kumar Sehgal, Marion S Röder

Comparison of the chloroplast peroxidase system in the chlorophyte Chlamydomonas reinhardtii, the bryophyte Physcomitrella patens, the lycophyte Selaginella moellendorffii and the seed plant Arabidopsis thaliana
Nicola T. Pitsch, Benjamin Witsch, Margarete Baier

Meta-analysis of cotton fiber quality QTLs across diverse environments in a Gossypium hirsutum x G. barbadense RIL population
Jean-Marc Lacape, Danny Llewellyn, John Jacobs, Tony Arioli, David Becker, Steve Calhoun, Yves Al-Ghazi, Shiming Liu, Oumarou Palai, Sophie Georges, Marc Giband, Henrique de Assunçao, Paulo Augusto Vianna Barroso, Michel Claverie, Gérard Gawryziak, Janine Jean, Michele Vialle, Christopher Viot

A novel allele of FILAMENTOUS FLOWER reveals new insights on the link between inflorescence and floral meristem organization and flower morphogenesis
Nitsan Lugassi, Naomi Nakayama, Rachel Bochnik, Moriyah Zik

Coordinated transcriptional regulation of two key genes in the lignin branch pathway - CAD and CCR - is mediated through MYB- binding sites
Anjanirina Rahantamalala, Philippe Rech, Yves Martinez, Nicole Chaubet-Gigot, Jacqueline Grima-Pettenati, Valérie Pacquit

Large scale interaction analysis predicts that the Gerbera hybrida floral E function is provided both by general and specialized proteins
Satu Ruokolainen, Yan Peng Ng, Victor A. Albert, Paula Elomaa, Teemu H. Teeri

Characterization of SQUAMOSA-like genes in Gerbera hybrida, including one involved in reproductive transition
Satu Ruokolainen, Yan Peng Ng, Suvi K. Broholm, Victor A. Albert, Paula Elomaa, Teemu H. Teeri

Extracting samples of high diversity from thematic collections of large gene banks using a genetic-distance based approach
Marco Pessoa-Filho, Paulo H.N. Rangel, Marcio E. Ferreira

Coordination of the maize transcriptome by a conserved circadian clock
Sadaf Khan, Scott C. Rowe, Frank G. Harmon

The mitochondrial gene orfH79 plays a critical role in impairing both male gametophyte development and root growth in CMS-Honglian rice
Xiaojue Peng, Kun Wang, Chaofeng Hu, Youlin Zhu, Ting Wang, Jing Yang, Jiping Tong, Shaoqing Li, Yingguo Zhu

Comparison of low molecular weight glutenin subunits identified by SDS-PAGE, 2-DE, MALDI-TOF-MS and PCR in common wheat
Li Liu, Tatsuya M. Ikeda, Gerard Branlard, Roberto J. Pena, William J. Rogers, Silvia E. Lerner, María A. Kolman, Xianchun Xia, Linhai Wang, Wujun Ma, Rudi Appels, Hisashi Yoshida, Aili Wang, Yueming Yan, Zhonghu He

Diverse set of microRNAs are responsive to powdery mildew infection and heat stress in wheat (Triticum aestivum L.)
Mingming Xin, Yu Wang, Yingyin Yao, Chaojie Xie, Huiru Peng, Zhongfu Ni, Qixin Sun

Identification of novel genes potentially involved in somatic embryogenesis in chicory (Cichorium intybus L.)
Anca Lucau-Danila, Laurent Laborde, Sylvain Legrand, Ludovic Huot, David Hot, Yves Lemoine, Jean-Louis Hilbert, Simon Hawkins, Marie-Christine Quillet, Theo Hendriks, Anne-Sophie Blervacq

Adaptation and diversity along an altitudinal gradient in Ethiopian barley (Hordeum vulgare L.) landraces revealed by molecular analysis
Tesema Tanto Hadado, Domenico Rau, Elena Bitocchi, Roberto Papa

Changes in the proteomic and metabolic profiles of Beta vulgaris root tips in response to iron deficiency and resupply
Rubén Rellán-Álvarez, Sofía Andaluz, Jorge Rodríguez-Celma, Gert Wohlgemuth, Graziano Zocchi, Ana Álvarez-Fernández, Oliver Fiehn, Ana Flor López-Millán, Javier Abadía

Duplication, divergence and persistence in the Phytochrome photoreceptor gene family of cottons (Gossypium spp.)
Ibrokhim Y. Abdurakhmonov, Zabardast T. Buriev, Carla Jo Logan-Young, Abdusattor Abdukarimov, Alan E. Pepper

The CaaX specificities of Arabidopsis protein prenyltransferases explain era1 and ggb phenotypes
Michelle Andrews, David H. Huizinga, Dring N. Crowell

Genome-wide and molecular evolution analyses of the phospholipase D gene family in Poplar and Grape
Qi Liu, Chiyu Zhang, Yongping Yang, Xiangyang Hu

Genome-wide characterization of the biggest grass, bamboo, based on 10,608 putative full-length cDNA sequences
Zhenhua Peng, Tingting Lu, Lubin Li, Xiaohui Liu, Zhimin Gao, Tao Hu, Xuewen Yang, Qi Feng, Jianping Guan, Qijun Weng, Danlin Fan, Chuanrang Zhu, Ying Lu, Bin Han, Zehui Jiang

Plant neighbor identity influences plant biochemistry and physiology related to defense
Amanda K. Broz, Corey D. Broeckling, Clelia De-la-Pena, Matthew R. Lewis, Erick Greene, Ragan M. Callaway, Lloyd W. Sumner, Jorge M. Vivanco

Identifying new lignin bioengineering targets: 1. Monolignol-substitute impacts on lignin formation and cell wall fermentability
John H. Grabber, Paul F. Schatz, Hoon Kim, Fachuang Lu, John Ralph

Structural and transcriptional analysis of plant genes encoding the bifunctional lysine ketoglutarate reductase saccharopine dehydrogenase enzyme
Olin D. Anderson, Devin Coleman-Derr, Yong Q. Gu, Sekou Heath

Chromosomal loci important for cotyledon opening under UV-B in Arabidopsis thaliana
Mariana Conte, Silvia de Simone, Susan J. Simmons, Carlos L. Ballaré, Ann E. Stapleton

Comparative transcriptional profiling-based identification of raphanusanin-inducible genes
Moehninsi, Kenji Miura, Haruyuki Nakajyo, Kosumi Yamada, Koji Hasegawa, Hideyuki Shigemori

Identification of transcription-factor genes expressed in the Arabidopsis female gametophyte
Dongfang Wang, Changqing Zhang, David J. Hearn, Il-Ho Kang, Jayson A. Punwani, Megan I. Skaggs, Gary N. Drews, Karen S. Schumaker, Ramin Yadegari

Does the core circadian clock in the moss Physcomitrella patens (Bryophyta) comprise a single loop?
Karl Holm, Thomas Källman, Niclas Gyllenstrand, Harald Hedman, Ulf Lagercrantz

Expression profiling of Crambe abyssinica under arsenate stress identifies genes and gene networks involved in arsenic metabolism and detoxification
Bibin Paulose, Suganthi Kandasamy, Om Parkash Dhankher

Isolation and antisense suppression of flavonoid 3', 5'-hydroxylase modifies flower pigments and colour in cyclamen
Murray R. Boase, David H. Lewis, Kevin M. Davies, Gayle B. Marshall, Deepa Patel, Kathy E. Schwinn, Simon C. Deroles

Laser microdissection of conifer stem tissues: Isolation and analysis of high quality RNA, terpene synthase enzyme activity and terpenoid metabolites from resin ducts and cambial zone tissue of white spruce (Picea glauca)
Eric Abbott, Dawn Hall, Björn Hamberger, Jörg Bohlmann

Intricate environment-modulated genetic networks control isoflavone accumulation in soybean seeds
Juan J. Gutierrez-Gonzalez, Xiaolei Wu, Jason D. Gillman, Jeong-Dong Lee, Rui Zhong, Oliver Yu, Grover Shannon, Mark Ellersieck, Henry T. Nguyen, David A. Sleper

A nematode demographics assay in transgenic roots reveals no significant impacts of the Rhg1 locus LRR-Kinase on soybean cyst nematode resistance
Sara Melito, Adam L. Heuberger, David Cook, Brian W. Diers, Ann E. MacGuidwin, Andrew F. Bent

Resistance loci affecting distinct stages of fungal pathogenesis: use of introgression lines for QTL mapping and characterization in the maize - Setosphaeria turcica pathosystem
Chia-Lin Chung, Joy M. Longfellow, Ellie K. Walsh, Zura Kerdieh, George Van Esbroeck, Peter Balint-Kurti, Rebecca J. Nelson

Prevalence of alternative splicing choices in Arabidopsis thaliana
Adam C. English, Ketan S. Patel, Ann E. Loraine

The Protein Disulfide Isomerase gene family in bread wheat (T. aestivum L.)
Elisa d'Aloisio, Anna R. Paolacci, Arun P. Dhanapal, Oronzo A. Tanzarella, Enrico Porceddu, Mario Ciaffi

Phylogeny and expression profiling of CAD and CAD-like genes in hybrid Populus (P. deltoides × P. nigra): evidence from herbivore damage for subfunctionalization and functional divergence
Abdelali Barakat, Agnieszka Bagniewska-Zadworna, Christopher J. Frost, John E. Carlson

Wheat beta-expansin (EXPB11) genes: Identification of the expressed gene on chromosome 3BS carrying a pollen allergen domain
James Breen, Dora Li, David S. Dunn, Ferenc Békés, Xiuying Kong, Juncheng Zhang, Jizeng Jia, Thomas Wicker, Rohit Mago, Wujun Ma, Matthew Bellgard, Rudi Appels

A highly conserved gene island of three genes on chromosome 3B of hexaploid wheat: diverse gene function and genomic structure maintained in a tightly linked block
James Breen, Thomas Wicker, Xiuying Kong, Juncheng Zhang, Wujun Ma, Etienne Paux, Catherine Feuillet, Rudi Appels, Matthew Bellgard

Regulation of Arabidopsis defense responses against Spodoptera littoralis by CPK-mediated calcium signaling
Chidananda Nagamangala Kanchiswamy, Hirotaka Takahashi, Stefano Quadro, Massimo E. Maffei, Simone Bossi, Cinzia Bertea, Simon Atsbaha Zebelo, Atsushi Muroi, Nobuaki Ishihama, Hirofumi Yoshioka, Wilhelm Boland, Junji Takabayashi, Yaeta Endo, Tatsuya Sawasaki, Gen-ichiro Arimura

Uncovering the evolutionary origin of plant molecular processes: comparison of Coleochaete (Coleochaetales) and Spirogyra (Zygnematales) transcriptomes
Ruth E. Timme, Charles F. Delwiche

Transcriptional regulation of the CRK/DUF26 group of Receptor-like protein kinases by ozone and plant hormones in Arabidopsis
Michael Wrzaczek, Mikael Brosché, Jarkko Salojärvi, Saijaliisa Kangasjärvi, Niina Idänheimo, Sophia Mersmann, Silke Robatzek, Stanisław Karpiński, Barbara Karpińska, Jaakko Kangasjärvi

Comparison of homoeolocus organisation in paired BAC clones from white clover (Trifolium repens L.) and microcolinearity with model legume species
Melanie L. Hand, Noel O.I. Cogan, Timothy I. Sawbridge, German C. Spangenberg, John W. Forster

The leader intron of AtMHX can elicit, in the absence of splicing, low-level intron-mediated enhancement that depends on the internal intron sequence
Tsofit Akua, Irina Berezin, Orit Shaul

Genomic survey, characterization and expression profile analysis of the peptide transporter family in rice (Oryza sativa L.)
Xiaobo Zhao, Jianyan Huang, Huihui Yu, Lei Wang, Weibo Xie

The effect of flower position on variation and covariation in floral traits in a wild hermaphrodite plant
Zhi-Gang Zhao, Guo-Zhen Du, Shuang-Quan Huang

Identification of a new 130 bp cis-acting element in the TsVP1 promoter involved in the salt stress response from Thellungiella halophila
Qinghua Sun, Feng Gao, Lei Zhao, Kunpeng Li, Juren Zhang

The role of actin isoforms in somatic embryogenesis in Norway spruce
Kateřina Schwarzerová, Zuzana Vondráková, Lukáš Fischer, Petra Boříková, Erica Bellinvia, Kateřina Eliášová, Lenka Havelková, Jindřiška Fišerová, Martin Vágner, Zdeněk Opatrný

Wheat gene bank accessions as a source of new alleles of the powdery mildew resistance gene Pm3: a large scale allele mining project
Navreet K. Bhullar, Zhiqing Zhang, Thomas Wicker, Beat Keller

Dating and functional characterization of duplicated genes in the apple (Malus domestica Borkh.) by analyzing EST data
Javier Sanzol

Development and characterization of an oat TILLING-population and identification of mutations in lignin and ß-glucan biosynthesis genes
Aakash Chawade, Per Sikora, Marcus Bräutigam, Mikael Larsson, Vivekanand Vivekanand, Montedar All Nakash, Tingsu Chen, Olof Olsson

Transcript profiling of common bean (Phaseolus vulgaris L.) using the GeneChip® Soybean Genome Array: optimizing analysis by masking biased probes
S Samuel Yang, Oswaldo Valdés-López, Wayne W. Xu, Bruna Bucciarelli, John W. Gronwald, Georgina Hernández, Carroll P. Vance

Atypical response regulators expressed in the maize endosperm transfer cells link canonical two component systems and seed biology
Luís M. Muniz, Joaquín Royo, Elisa Gómez, Gaelle Baudot, Wyatt Paul, Gregorio Hueros

The Dunaliella salina organelle genomes: large sequences, inflated with intronic and intergenic DNA
David Roy Smith, Robert W. Lee, John C. Cushman, Jon K. Magnuson, Duc Tran, Jürgen E.W. Polle

Shoot differentiation from protocorm callus cultures of Vanilla planifolia (Orchidaceae): proteomic and metabolic responses at early stage
Tony L. Palama, Patrice Menard, Isabelle Fock, Young H. Choi, Emmanuel Bourdon, Joyce Govinden-Soulange, Muriel Bahut, Bertrand Payet, Robert Verpoorte, Hippolyte Kodja

An examination of targeted gene neighborhoods in strawberry
Thomas M. Davis, Melanie E. Shields, Qian Zhang, Denise Tombolato-Terzić, Jeffrey L. Bennetzen, Ana C. Pontaroli, Hao Wang, Qin Yao, Phillip SanMiguel, Kevin M. Folta

A mutation in the cytosolic O-acetylserine (thiol) lyase induces a genome-dependent early leaf death phenotype in Arabidopsis
Reza Shirzadian-Khorramabad, Hai-Chun Jing, Gerja E. Everts, Jos H.M. Schippers, Jacques Hille, Paul P. Dijkwel

Linkage disequilibrium at the APA insecticidal seed protein locus of common bean (Phaseolus vulgaris L.)
Matthew W. Blair, Sergio Prieto, Lucy M. Díaz, Héctor F. Buendía, César Cardona

Sultr4;1 mutant seeds of Arabidopsis have an enhanced sulphate content and modified proteome suggesting metabolic adaptations to altered sulphate compartmentalization
Hélene Zuber, Jean-Claude Davidian, Markus Wirtz, Rüdiger Hell, Maya Belghazi, Richard Thompson, Karine Gallardo

Large impact of the apoplast on somatic embryogenesis in Cyclamen persicum offers possibilities for improved developmental control in vitro
Claudia Hoenemann, Sandra Richardt, Katja Krüger, Andreas D. Zimmer, Annette Hohe, Stefan A. Rensing

Identification and characterization of NAGNAG alternative splicing in the moss Physcomitrella patens
Rileen Sinha, Andreas D. Zimmer, Kathrin Bolte, Daniel Lang, Ralf Reski, Matthias Platzer, Stefan A. Rensing, Rolf Backofen

Tomato root transcriptome response to a nitrogen-enriched soil patch
Daniel R. Ruzicka, Felipe H. Barrios-Masias, Natasha T. Hausmann, Louise E. Jackson, Daniel P. Schachtman

The CRF domain defines Cytokinin Response Factor proteins in plants
Aaron M. Rashotte, Leslie R. Goertzen

Epigenetic chromatin modifiers in barley: IV. The study of barley Polycomb group (PcG) genes during seed development and in response to external ABA
Aliki Kapazoglou, Alessandro Tondelli, Dimitra Papaefthimiou, Helen Ampatzidou, Enrico Francia, Michele A. Stanca, Konstantinos Bladenopoulos, Athanasios S. Tsaftaris

Transcriptional profiles underlying parent-of-origin effects in seeds of Arabidopsis thaliana
Sushma Tiwari, Melissa Spielman, Reiner Schulz, Rebecca J. Oakey, Gavin Kelsey, Andres Salazar, Ke Zhang, Roger Pennell, Rod J. Scott

Selection of reference genes for quantitative gene expression normalization in flax (Linum usitatissimum L.)
Rudy Huis, Simon Hawkins, Godfrey Neutelings

Non-redundant functions of two proline dehydrogenase isoforms in Arabidopsis
Dietmar Funck, Sonja Eckard, Gudrun Müller

Cell-specific expression of tryptophan decarboxylase and 10-hydroxygeraniol oxidoreductase, key genes involved in camptothecin biosynthesis in Camptotheca acuminata Decne (Nyssaceae)
Alessio Valletta, Livio Trainotti, Anna Rita Santamaria, Gabriella Pasqua

Complete chloroplast genome of Oncidium Gower Ramsey and evaluation of molecular markers for identification and breeding in Oncidiinae
Fu-Hui Wu, Ming-Tsair Chan, De-Chih Liao, Chen-Tran Hsu, Yi-Wei Lee, Henry Daniell, Melvin R. Duvall, Choun-Sea Lin

Genetic transformation of cotton with a harpin-encoding gene hpaXoo confers an enhanced defense response against different pathogens through a priming mechanism
Weiguo Miao, Xiben Wang, Ming Li, Congfeng Song, Yu Wang, Dongwei Hu, Jinsheng Wang

SuperSAGE analysis of the Nicotiana attenuata transcriptome after fatty acid-amino acid elicitation (FAC): identification of early mediators of insect responses
Paola A. Gilardoni, Stefan Schuck, Ruth Jüngling, Björn Rotter, Ian T. Baldwin, Gustavo Bonaventure

A saturated SSR/DArT linkage map of Musa acuminata addressing genome rearrangements among bananas
Isabelle Hippolyte, Frederic Bakry, Marc Seguin, Laetitia Gardes, Ronan Rivallan, Ange-Marie Risterucci, Christophe Jenny, Xavier Perrier, Françoise Carreel, Xavier Argout, Pietro Piffanelli, Imtiaz A Khan, Robert NG Miller, Georgios J Pappas, Didier Mbéguié-A-Mbéguié, Takashi Matsumoto, Veronique De Bernardinis, Eric Huttner, Andrzej Kilian, Franc-Christophe Baurens, Angélique D'Hont, François Cote, Brigitte Courtois, Jean-Christophe Glaszmann

Phloem small RNAs, nutrient stress responses, and systemic mobility
Anja Buhtz, Janin Pieritz, Franziska Springer, Julia Kehr

Dissecting grain yield pathways and their interactions with grain dry matter content by a two-step correlation approach with maize seedling transcriptome
Junjie Fu, Alexander Thiemann, Tobias A. Schrag, Albrecht E. Melchinger, Stefan Scholten, Matthias Frisch

A rich TILLING resource for studying gene function in Brassica rapa
Pauline Stephenson, David Baker, Thomas Girin, Amandine Perez, Stephen Amoah, Graham J. King, Lars Ostergaard

Isolation and functional characterization of Lycopene ß-cyclase (CYC-B) promoter from Solanum habrochaites
Monika Dalal, Viswanathan Chinnusamy, Kailash C. Bansal

Genetic and transformation studies reveal negative regulation of ERS1 ethylene receptor signaling in Arabidopsis
Qian Liu, Chan Xu, Chi-Kuang Wen

Transcriptional responses to polycyclic aromatic hydrocarbon-induced stress in Arabidopsis thaliana reveal the involvement of hormone and defense signaling pathways
David Weisman, Merianne Alkio, Adán Colón-Carmona

Salt tolerance in Solanum pennellii: antioxidant response and related QTL
Anne Frary, Deniz Göl, Davut Keleş, Bilal Ökmen, Hasan Pinar, Hasan Ö. Şigva, Ahmet Yemenicioglu, Sami Doganlar

The YlmG protein has a conserved function related to the distribution of nucleoids in chloroplasts and cyanobacteria
Yukihiro Kabeya, Hiromitsu Nakanishi, Kenji Suzuki, Takanari Ichikawa, Youichi Kondou, Minami Matsui, Shin-ya Miyagishima

Defining reference genes in Oryza sativa using organ, development, biotic and abiotic transcriptome datasets
Reena Narsai, Aneta Ivanova, Sophia Ng, James Whelan

A full-length enriched cDNA library and expressed sequence tag analysis of the parasitic weed, Striga hermonthica
Satoko Yoshida, Juliane K. Ishida, Nasrein M. Kamal, Abdelbagi M. Ali, Shigetou Namba, Ken Shirasu

Origins of the amphiploid species Brassica napus L. investigated by chloroplast and nuclear molecular markers
Charlotte J. Allender, Graham J. King

Disruption of actin filaments induces mitochondrial Ca2+ release to the cytoplasm and [Ca2+]c changes in Arabidopsis root hairs
Yuqing Wang, Yingfang Zhu, Yu Ling, Haiyan Zhang, Peng Liu, František Baluška, Jozef Šamaj, Jinxing Lin, Qinli Wang

Accumulation of phenanthrene by roots of intact wheat (Triticum acstivnm L.) seedlings: passive or active uptake?
Xin-Hua Zhan, Heng-Liang Ma, Li-Xiang Zhou, Jian-Ru Liang, Ting-Hui Jiang, Guo-Hua Xu

A plant natriuretic peptide-like molecule of the pathogen Xanthomonas axonopodis pv. citri causes rapid changes in the proteome of its citrus host
Betiana S. Garavaglia, Ludivine Thomas, Tamara Zimaro, Natalia Gottig, Lucas D. Daurelio, Bongani Ndimba, Elena G. Orellano, Jorgelina Ottado, Chris Gehring

An R2R3 MYB transcription factor associated with regulation of the anthocyanin biosynthetic pathway in Rosaceae
Kui Lin-Wang, Karen Bolitho, Karryn Grafton, Anne Kortstee, Sakuntala Karunairetnam, Tony K. McGhie, Richard V. Espley, Roger P. Hellens, Andrew C. Allan

Identification and evaluation of new reference genes in Gossypium hirsutum for accurate normalization of real-time quantitative RT-PCR data
Sinara Artico, Sarah M. Nardeli, Osmundo Brilhante, Maria Fátima Grossi-de-Sa, Marcio Alves-Ferreira

Transmission ratio distortion results in asymmetric introgression in Louisiana Iris
Shunxue Tang, Rebecca A. Okashah, Steven J. Knapp, Michael L. Arnold, Noland H. Martin
.
The Arabidopsis EAR-motif-containing protein RAP2.1 functions as an active transcriptional repressor to keep stress responses under tight control
Chun-Juan Dong, Jin-Yuan Liu
.
Functional analysis of B and C class floral organ genes in spinach demonstrates their role in sexual dimorphism
D Noah Sather, Maja Jovanovic, Edward M. Golenberg

The first set of EST resource for gene discovery and marker development in pigeonpea (Cajanus cajan L.)
Nikku L. Raju, Belaghihalli N. Gnanesh, Pazhamala Lekha, Balaji Jayashree, Suresh Pande, Pavana J. Hiremath, Munishamappa Byregowda, Nagendra K. Singh, Rajeev K. Varshney

The Puf family of RNA-binding proteins in plants: phylogeny, structural modeling, activity and subcellular localization
Patrick P.C. Tam, Isabelle H. Barrette-Ng, Dawn M. Simon, Michael W.C. Tam, Amanda L. Ang, Douglas G. Muench

Small chloroplast-targeted DnaJ proteins are involved in optimization of photosynthetic reactions in Arabidopsis thaliana
Kun-Ming Chen, Maija Holmström, Wuttinun Raksajit, Marjaana Suorsa, Mirva Piippo, Eva-Mari Aro

Effects of manganese-excess on CO2 assimilation, ribulose-1,5-bisphosphate carboxylase/oxygenase, carbohydrates and photosynthetic electron transport of leaves, and antioxidant systems of leaves and roots in Citrus grandis seedlings
Qing Li, Li-Song Chen, Huan-Xin Jiang, Ning Tang, Lin-Tong Yang, Zheng-He Lin, Yan Li, Gang-Hua Yang

Complementary genetic and genomic approaches help characterize the linkage group I seed protein QTL in soybean
Yung-Tsi Bolon, Bindu Joseph, Steven B. Cannon, Michelle A. Graham, Brian W. Diers, Andrew D. Farmer, Gregory D. May, Gary J. Muehlbauer, James E. Specht, Zheng Jin Tu, Nathan Weeks, Wayne W. Xu, Randy C. Shoemaker, Carroll P. Vance
.
Pb-induced cellular defense system in the root meristematic cells of Allium sativum L
Wusheng Jiang, Donghua Liu
.
An unedited 1.1 kb mitochondrial orfB gene transcript in the Wild Abortive Cytoplasmic Male Sterility (WA-CMS) system of Oryza sativa L. subsp. indica
Srirupa Das, Supriya Sen, Anirban Chakraborty, Papia Chakraborti, Mrinal K. Maiti, Asitava Basu, Debabrata Basu, Soumitra K. Sen

The Botrytis cinerea xylanase Xyn11A contributes to virulence with its necrotizing activity, not with its catalytic activity
Judith Noda, Nélida Brito, Celedonio González

Potential chromosomal introgression barriers revealed by linkage analysis in a hybrid of Pinus massoniana and P. hwangshanensis
Shuxian Li, Ying Chen, Handong Gao, Tongming Yin

Cellular localization of ROS and NO in olive reproductive tissues during flower development
Adoración Zafra, María Isabel Rodríguez-García, Juan de Dios Alché

Sequence analysis of two alleles reveals that intra-and intergenic recombination played a role in the evolution of the radish fertility restorer (Rfo)
José R. Hernandez Mora, Eric Rivals, Hakim Mireau, Françoise Budar

Salicylic acid alleviates decreases in photosynthesis under heat stress and accelerates recovery in grapevine leaves
Li-Jun Wang, Ling Fan, Wayne Loescher, Wei Duan, Guo-Jie Liu, Jian-Shan Cheng, Hai-Bo Luo, Shao-Hua Li

STIL, a peculiar molecule from styles, specifically dephosphorylates the pollen receptor kinase LePRK2 and stimulates pollen tube growth in vitro
Diego L. Wengier, María A. Mazzella, Tamara M. Salem, Sheila McCormick, Jorge P. Muschietti

Mechanistic insights from a quantitative analysis of pollen tube guidance
Shannon F. Stewman, Matthew Jones-Rhoades, Prabhakar Bhimalapuram, Martin Tchernookov, Daphne Preuss, Aaron R. Dinner

Novel induced mlo mutant alleles in combination with site-directed mutagenesis reveal functionally important domains in the heptahelical barley Mlo protein
Anja Reinstädler, Judith Müller, Jerzy H. Czembor, Pietro Piffanelli, Ralph Panstruga

Functional characterization of Arabidopsis thaliana transthyretin-like protein
Joao Pessoa, Zsuzsa Sárkány, Frederico Ferreira-da-Silva, Sónia Martins, Maria R. Almeida, Jianming Li, Ana M. Damas

Exposure of beta-tubulin regions defined by antibodies on an Arabidopsis thaliana microtubule protofilament model and in the cells
Yaroslav Blume, Alla Yemets, Yarina Sheremet, Alexey Nyporko, Vadym Sulimenko, Tetyana Sulimenko, Pavel Dráber

Traditional agroecosystems as conservatories and incubators of cultivated plant varietal diversity: the case of fig (Ficus carica L.) in Morocco
Hafid Achtak, Mohammed Ater, Ahmed Oukabli, Sylvain Santoni, Finn Kjellberg, Bouchaib Khadari

Polymorphisms in O-methyltransferase genes are associated with stover cell wall digestibility in European maize (Zea mays L.)
Everton A. Brenner, Imad Zein, Yongsheng Chen, Jeppe R. Andersen, Gerhard Wenzel, Milena Ouzunova, Joachim Eder, Birte Darnhofer, Uschi Frei, Yves Barriere, Thomas Lübberstedt

Iron and ferritin accumulate in separate cellular locations in Phaseolus seeds
Cristina Cvitanich, Wojciech J. Przybyłowicz, Dorian F. Urbanski, Anna M. Jurkiewicz, Jolanta Mesjasz-Przybyłowicz, Matthew W. Blair, Carolina Astudillo, Erik O. Jensen, Jens Stougaard

Identification of genes associated with growth cessation and bud dormancy entrance using a dormancy-incapable tree mutant
Sergio Jiménez, Zhigang Li, Gregory L. Reighard, Douglas G. Bielenberg

Analysis of gene expression in response to water deficit of chickpea (Cicer arietinum L.) varieties differing in drought tolerance
Deepti Jain, Debasis Chattopadhyay

Can differences in phosphorus uptake kinetics explain the distribution of cattail and sawgrass in the Florida Everglades?
Hans Brix, Bent Lorenzen, Irving A. Mendelssohn, Karen L. McKee, ShiLi Miao

The origin of populations of Arabidopsis thaliana in China, based on the chloroplast DNA sequences
Ping Yin, Juqing Kang, Fei He, Li-Jia Qu, Hongya Gu

Identification and characterisation of CYP75A31, a new flavonoid 3'5'-hydroxylase, isolated from Solanum lycopersicum
Kristine M. Olsen, Alain Hehn, Hélene Jugdé, Rune Slimestad, Romain Larbat, Frédéric Bourgaud, Cathrine Lillo

The Arabidopsis pop2-1 mutant reveals the involvement of GABA transaminase in salt stress tolerance
Hugues Renault, Valérie Roussel, Abdelhak El Amrani, Matthieu Arzel, David Renault, Alain Bouchereau, Carole Deleu

Factors influencing the production of stilbenes by the knotweed, Reynoutria × bohemica
Marcela Kovářová, Kristýna Bartůňková, Tomáš Frantík, Helena Koblihová, Kateřina Prchalová, Miroslav Vosátka

Identification and functional characterisation of the promoter of the calcium sensor gene CBL1 from the xerophyte Ammopiptanthus mongolicus
Lili Guo, Yanhua Yu, Xinli Xia, Weilun Yin

A SSR-based composite genetic linkage map for the cultivated peanut (Arachis hypogaea L.) genome
Yanbin Hong, Xiaoping Chen, Xuanqiang Liang, Haiyan Liu, Guiyuan Zhou, Shaoxiong Li, Shijie Wen, C. Corley Holbrook, Baozhu Guo

Transcriptional regulatory network triggered by oxidative signals configures the early response mechanisms of japonica rice to chilling stress
Kil-Young Yun, Myoung Ryoul Park, Bijayalaxmi Mohanty, Venura Herath, Fuyu Xu, Ramil Mauleon, Edward Wijaya, Vladimir B. Bajic, Richard Bruskiewich, Benildo G. de los Reyes

Genetic relationships among seven sections of genus Arachis studied by using SSR markers
Ravi Koppolu, Hari D. Upadhyaya, Sangam L. Dwivedi, David A. Hoisington, Rajeev K. Varshney

SoyDB: a knowledge database of soybean transcription factors
Zheng Wang, Marc Libault, Trupti Joshi, Babu Valliyodan, Henry T. Nguyen, Dong Xu, Gary Stacey, Jianlin Cheng

Single nucleotide polymorphisms for assessing genetic diversity in castor bean (Ricinus communis)
Jeffrey T. Foster, Gerard J. Allan, Agnes P. Chan, Pablo D. Rabinowicz, Jacques Ravel, Paul J. Jackson, Paul Keim

Polymorphisms in monolignol biosynthetic genes are associated with biomass yield and agronomic traits in European maize (Zea mays L.)
Yongsheng Chen, Imad Zein, Everton Alen Brenner, Jeppe Reitan Andersen, Mathias Landbeck, Milena Ouzunova, Thomas Lübberstedt

Transcription profiles of mitochondrial genes correlate with mitochondrial DNA haplotypes in a natural population of Silene vulgaris
Hosam O Elansary, Karel Müller, Matthew S. Olson, Helena Štorchová

Dynamics of DNA methylation and Histone H4 acetylation during floral bud differentiation in azalea
Mónica Meijón, Isabel Feito, Luis Valledor, Roberto Rodríguez, María Jesús Canal

Differential gene expression in incompatible interaction between wheat and stripe rust fungus revealed by cDNA-AFLP and comparison to compatible interaction
Xiaojie Wang, Wei Liu, Xianming Chen, Chunlei Tang, Yanling Dong, Jinbiao Ma, Xueling Huang, Guorong Wei, Qingmei Han, Lili Huang, Zhensheng Kang

Analysis of a c0t-1 library enables the targeted identification of minisatellite and satellite families in Beta vulgaris
Falk Zakrzewski, Torsten Wenke, Daniela Holtgräwe, Bernd Weisshaar, Thomas Schmidt

Analysis of expressed sequence tags from a single wheat cultivar facilitates interpretation of tandem mass spectrometry data and discrimination of gamma gliadin proteins that may play different functional roles in flour
Susan B. Altenbach, William H. Vensel, Frances M. DuPont

Identification of a Rice stripe necrosis virus resistance locus and yield component QTLs using Oryza sativa × O. glaberrima introgression lines
Andrés Gonzalo Gutiérrez, Silvio James Carabalí, Olga Ximena Giraldo, César Pompilio Martínez, Fernando Correa, Gustavo Prado, Joe Tohme, Mathias Lorieux

DNA polymorphisms and haplotype patterns of transcription factors involved in barley endosperm development are associated with key agronomic traits
Grit Haseneyer, Silke Stracke, Hans-Peter Piepho, Sascha Sauer, Hartwig H. Geiger, Andreas Graner

Validation of reference genes for quantitative real-time PCR during leaf and flower development in Petunia hybrida
Izaskun Mallona, Sandra Lischewski, Julia Weiss, Bettina Hause, Marcos Egea-Cortines

Deep sequencing identifies novel and conserved microRNAs in peanuts (Arachis hypogaea L.)
Chuan-Zhi Zhao, Han Xia, Taylor Price Frazier, Ying-Yin Yao, Yu-Ping Bi, Ai-Qin Li, Meng-Jun Li, Chang-Sheng Li, Bao-Hong Zhang, Xing-Jun Wang

QTLs and candidate genes for desiccation and abscisic acid content in maize kernels
Valérie Capelle, Carine Remoué, Laurence Moreau, Agnes Reyss, Aline Mahé, Agnes Massonneau, Matthieu Falque, Alain Charcosset, Claudine Thévenot, Peter Rogowsky, Sylvie Coursol, Jean-Louis Prioul

Identification of genes differentially expressed during interaction of resistant and susceptible apple cultivars (Malus × domestica) with Erwinia amylovora
Angela Baldo, Jay L. Norelli, Robert E Farrell Jr, Carole L. Bassett, Herb S. Aldwinckle, Mickael Malnoy


===============
plant | roślina | bimore | usine | rostlina | plante | tehase | planta | augalas | augu | Anlage | Anlegg | rastlina | rastlin | növényfajta | piante
===============
POLITYKA I NIE TYLKO , PRZEPISY KULINARNE , ULUBIONE KSIĄŻKI , DOWCIPY , GEOGRAFIA , ŚWIEBODZICE , FORUM O RODZAJU HOYA

__________