Genome Biology and Evolution - 4 (11), 2012

Contents:

Research Articles

        Andrea Hodgins-Davis, Aleksandra B. Adomas, Jonas Warringer, and Jeffrey P. Townsend
    Abundant Gene-by-Environment Interactions in Gene Expression Reaction Norms to Copper within Saccharomyces cerevisiae
   
        Renfu Shao, Xing-Quan Zhu, Stephen C. Barker, and Kate Herd
    Evolution of Extensively Fragmented Mitochondrial Genomes in the Lice of Humans
   
        Ken Daigoro Yokoyama and David D. Pollock
    SP Transcription Factor Paralogs and DNA-Binding Sites Coevolve and Adaptively Converge in Mammals and Birds
  
        Peter W. Harrison, Judith E. Mank, and Nina Wedell
    Incomplete Sex Chromosome Dosage Compensation in the Indian Meal Moth, Plodia interpunctella, Based on De Novo Transcriptome Assembly
  
        Yuichiro Hara, Tadashi Imanishi, and Yoko Satta
    Reconstructing the Demographic History of the Human Lineage Using Whole-Genome Sequences from Human and Three Great Apes
  
        Danielle Venton
    Highlight: Family Ties—New Evidence Simplifies Human Evolutionary Tree
   
        Christa E. Moore, Bruce Curtis, Tyler Mills, Goro Tanifuji, and John M. Archibald
    Nucleomorph Genome Sequence of the Cryptophyte Alga Chroomonas mesostigmatica CCMP1168 Reveals Lineage-Specific Gene Loss and Genome Complexity
   
        Daniel Croll and Bruce A. McDonald
    Intron Gains and Losses in the Evolution of Fusarium and Cryptococcus Fungi
   
        Guoqin Yu and Arlin Stoltzfus
    Population Diversity of ORFan Genes in Escherichia coli
  
        Raquel Assis, Qi Zhou, and Doris Bachtrog
    Sex-Biased Transcriptome Evolution in Drosophila
  
Letters

        Janna L. Fierst and Patrick C. Phillips
    Variance in Epistasis Links Gene Regulation and Evolutionary Rate in the Yeast Genetic Interaction Network
   
        Sankar Subramanian and David M. Lambert
    Selective Constraints Determine the Time Dependency of Molecular Rates for Human Nuclear Genomes
   
Erratum

        Andrea Hodgins-Davis, Aleksandra B. Adomas, Jonas Warringer, and Jeffrey P. Townsend
    Abundant Gene-by-Environment Interactions in Gene Expression Reaction Norms to Copper within Saccharomyces cerevisiae
   
        Ching-Ping Lin, Chung-Shien Wu, Ya-Yi Huang, and Shu-Miaw Chaw
    The Complete Chloroplast Genome of Ginkgo biloba Reveals the Mechanism of Inverted Repeat Contraction
   
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Biogeosciences - 9 (4), 2012

Contents:

Experimental assessment of the effect of UVB radiation on plankton community metabolism along the Southeastern Pacific off Chile
N. Godoy, A. Canepa, S. Lasternas, E. Mayol, S. Ruíz-Halpern, S. Agustí, J. C. Castilla, and C. M. Duarte

Indirect drivers of plant diversity-productivity relationship in semiarid sandy grasslands
X. A. Zuo, J. M. H. Knops, X. Y. Zhao, H. L. Zhao, T. H. Zhang, Y. Q. Li, and Y. R. Guo

Is forest management a significant source of monoterpenes into the boreal atmosphere?
S. Haapanala, H. Hakola, H. Hellén, M. Vestenius, J. Levula, and J. Rinne

Size distribution of particles and zooplankton across the shelf-basin system in southeast Beaufort Sea: combined results from an Underwater Vision Profiler and vertical net tows
A. Forest, L. Stemmann, M. Picheral, L. Burdorf, D. Robert, L. Fortier, and M. Babin

Simulation of anthropogenic CO2 uptake in the CCSM3.1 ocean circulation-biogeochemical model: comparison with data-based estimates
S. Wang, J. K. Moore, F. W. Primeau, and S. Khatiwala

Nitrous oxide fluxes from tropical peat with different disturbance history and management
J. Jauhiainen, H. Silvennoinen, R. Hämäläinen, K. Kusin, S. Limin, R. J. Raison, and H. Vasander

Multifactor controls on terrestrial N2O flux over North America from 1979 through 2010
X. F. Xu, H. Q. Tian, G. S. Chen, M. L. Liu, W. Ren, C. Q. Lu, and C. Zhang

Temporal variability of live (stained) benthic foraminiferal faunas in a river-dominated shelf – Faunal response to rapid changes of the river influence (Rhône prodelta, NW Mediterranean)
A. Goineau, C. Fontanier, F. Jorissen, R. Buscail, P. Kerhervé, C. Cathalot, A. M. Pruski, F. Lantoine, S. Bourgeois, E. Metzger, E. Legrand, and C. Rabouille

Inferring Amazon leaf demography from satellite observations of leaf area index
S. Caldararu, P. I. Palmer, and D. W. Purves

Factors promoting larch dominance in central Siberia: fire versus growth performance and implications for carbon dynamics at the boundary of evergreen and deciduous conifers
E.-D. Schulze, C. Wirth, D. Mollicone, N. von Lüpke, W. Ziegler, F. Achard, M. Mund, A. Prokushkin, and S. Scherbina

Soil moisture control over autumn season methane flux, Arctic Coastal Plain of Alaska
C. S. Sturtevant, W. C. Oechel, D. Zona, Y. Kim, and C. E. Emerson

Threshold of carbonate saturation state determined by CO2 control experiment
S. Yamamoto, H. Kayanne, M. Terai, A. Watanabe, K. Kato, A. Negishi, and K. Nozaki

Spatial variations of nitrogen trace gas emissions from tropical mountain forests in Nyungwe, Rwanda
N. Gharahi Ghehi, C. Werner, L. Cizungu Ntaboba, J. J. Mbonigaba Muhinda, E. Van Ranst, K. Butterbach-Bahl, R. Kiese, and P. Boeckx

Increasing iron concentrations in surface waters – a factor behind brownification?
E. S. Kritzberg and S. M. Ekström

Peat decomposition records in three pristine ombrotrophic bogs in southern Patagonia
T. Broder, C. Blodau, H. Biester, and K. H. Knorr

Greenhouse gas emissions from the grassy outdoor run of organic broilers
B. Meda, C. R. Flechard, K. Germain, P. Robin, C. Walter, and M. Hassouna

Interactions between uptake of amino acids and inorganic nitrogen in wheat plants
E. Gioseffi, A. de Neergaard, and J. K. Schjoerring

Dynamics of phytoplankton community structure in the South China Sea in response to the East Asian aerosol input
C. Guo, J. Yu, T.-Y. Ho, L. Wang, S. Song, L. Kong, and H. Liu

Investigating the stomatal, cuticular and soil ammonia fluxes over a growing tritical crop under high acidic loads
B. Loubet, C. Decuq, E. Personne, R. S. Massad, C. Flechard, O. Fanucci, N. Mascher, J.-C. Gueudet, S. Masson, B. Durand, S. Genermont, Y. Fauvel, and P. Cellier

The effect of meter-scale lateral oxygen gradients at the sediment-water interface on selected organic matter based alteration, productivity and temperature proxies
K. A. Bogus, K. A. F. Zonneveld, D. Fischer, S. Kasten, G. Bohrmann, and G. J. M. Versteegh

Dissolved organic matter in sea spray: a transfer study from marine surface water to aerosols
P. Schmitt-Kopplin, G. Liger-Belair, B. P. Koch, R. Flerus, G. Kattner, M. Harir, B. Kanawati, M. Lucio, D. Tziotis, N. Hertkorn, and I. Gebefügi

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