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Pokazywanie postów oznaczonych etykietą phylogeny. Pokaż wszystkie posty

poniedziałek, 18 lutego 2013

Genome Biology and Evolution - 4 (8), 2012






Contents:

Research Articles

        Frauke Baymann, Barbara Schoepp-Cothenet, Evelyne Lebrun, Robert van Lis, and Wolfgang Nitschke
    Phylogeny of Rieske/cytb Complexes with a Special Focus on the Haloarchaeal Enzymes
   
        Kristen S. Swithers, Amanda K. Petrus, Michael A. Secinaro, Camilla L. Nesbo, J. Peter Gogarten, Kenneth M. Noll, and Nicholas C. Butzin
    Vitamin B12 Synthesis and Salvage Pathways Were Acquired by Horizontal Gene Transfer to the Thermotogales
  
        Georgia Tsagkogeorga, Vincent Cahais, and Nicolas Galtier
    The Population Genomics of a Fast Evolver: High Levels of Diversity, Functional Constraint, and Molecular Adaptation in the Tunicate Ciona intestinalis
 
        Danielle Venton
    Highlight—Lowly Sea Cucumber Leads the Evolutionary Race
  
        Bertanne Visser, Dick Roelofs, Daniel A. Hahn, Peter E. A. Teal, Janine Mariën, and Jacintha Ellers
    Transcriptional Changes Associated with Lack of Lipid Synthesis in Parasitoids
  
Invited Review

        Gabriel Luz Wallau, Mauro Freitas Ortiz, and Elgion Lucio Silva Loreto
    Horizontal Transposon Transfer in Eukarya: Detection, Bias, and Perspectives
   
Letters

        Olga Zhaxybayeva, Kristen S. Swithers, Julia Foght, Anna G. Green, David Bruce, Chris Detter, Shunsheng Han, Hazuki Teshima, James Han, Tanja Woyke, Sam Pitluck, Matt Nolan, Natalia Ivanova, Amrita Pati, Miriam L. Land, Marlena Dlutek, W. Ford Doolittle, Kenneth M. Noll, and Camilla L. Nesbo
    Genome Sequence of the Mesophilic Thermotogales Bacterium Mesotoga prima MesG1.Ag.4.2 Reveals the Largest Thermotogales Genome To Date
   
        Janet S. Sinsheimer, Roderick J. A. Little, and James A. Lake
    Rooting Gene Trees without Outgroups: EP Rooting
   
        Devin M. Drown, Kevin M. Preuss, and Michael J. Wade
    Evidence of a Paucity of Genes That Interact with the Mitochondrion on the X in Mammals
 
        Danielle Venton
    Highlight: “Keeping the Boys in the Conversation: Male Fitness Shapes the Location of Genes that Interact with Mitochondria”
 




EXBINO

środa, 12 grudnia 2012

Cladistics - 28 (4), 2012




Contents:


    Phylogeny of the Paniceae (Poaceae: Panicoideae): integrating plastid DNA sequences and morphology into a new classification (pages 333–356)

    Osvaldo Morrone, Lone Aagesen, Maria A. Scataglini, Diego L. Salariato, Silvia S. Denham, Maria A. Chemisquy, Silvana M. Sede, Liliana M. Giussani, Elizabeth A. Kellogg and Fernando O. Zuloaga

   
    Polyphasic approach and typification of selected Phormidium strains (Cyanobacteria) (pages 357–374)

    Katia Sciuto, Carlo Andreoli, Nicoletta Rascio, Nicoletta La Rocca and Isabella Moro

   
    Toward a natural classification: phylogeny of acontiate sea anemones (Cnidaria, Anthozoa, Actiniaria) (pages 375–392)

    Estefanía Rodríguez, Marcos Barbeitos, Marymegan Daly, Luciana C. Gusmao and Verena Häussermann

  
    Combined phylogenetic analyses reveal interfamilial relationships and patterns of floral evolution in the eudicot order Fabales (pages 393–421)

    M. Angélica Bello, Paula J. Rudall and Julie A. Hawkins

  
    3ta Sleeps with the fishes (pages 422–436)

    James S. Farris


   
============

wtorek, 4 grudnia 2012

Castanea - 77 (2), 2012





Contents:

Influences of Hemlock Woolly Adelgid–Induced Stand-Level Mortality on Nitrogen Cycling and Stream Water Nitrogen Concentrations in Southern Pennsylvania

Jason F. Cessna and Caroline Nielsen


Soil Factors in Three Populations of Endangered Golden Sedge (Carex lutea LeBlond)

John B. Taggart and Zachary T. Long


Reintroduction of Federally Endangered Harperella (Harperella nodosum Rose) in Flood-Prone, Artificial, and Natural Habitats 

Elizabeth Fortson Wells


Scientific Note: Addendum to a Calculation of Expected Plant Frequency 

Steven R. Helm


Floral Colonization of a Free-Water Surface Constructed Wetland System in Grady County, Georgia 

Sarah A. White, Milton D. Taylor, and Dixie Z. Damrel


Diarrhena obovata in the Potomac River Watershed: A New Invader? 

Chris Lea


Noteworthy Collections: Pennsylvania 

Jerry G. Chmielewski


Noteworthy Collections: Mississippi and Louisiana 

Mac H. Alford


Phylogeny and Phylogeography of North American Castanea Mill. (Fagaceae) Using cpDNA Suggests Gene Sharing in the Southern Appalachians (Castanea Mill., Fagaceae) no access

Joey Shaw, J. Hill Craddock, and Meagan A. Binkley
 
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niedziela, 30 września 2012

BMC Plant Biology - 12 (June), 2012






Contents:



Reprogramming of gene expression during compression wood formation in pine: Coordinated modulation of S-adenosylmethionine, lignin and lignan related genes

David P. Villalobos, Sara M. Díaz-Moreno, El-Sayed S Said, Rafael A. Canas, Daniel Osuna, Sonia H. E. Van Kerckhoven, Rocío Bautista, Manuel Claros, Francisco M. Cánovas, Francisco R. Cantón


Role of adventitious roots in water relations of tamarack (Larix laricina) seedlings exposed to flooding

Mónica Calvo-Polanco, Jorge Senorans, Janusz J. Zwiazek


The AINTEGUMENTA genes, MdANT1 and MdANT2, are associated with the regulation of cell production during fruit growth in apple (Malus × domestica Borkh.)

Madhumita Dash, Anish Malladi 


Expression conservation within the circadian clock of a monocot: natural variation at barley Ppd-H1 affects circadian expression of flowering time genes, but not clock orthologs

Chiara Campoli, Munqez Shtaya, Seth J. Davis, Maria von Korff 


Characterization of non-host resistance in broad bean to the wheat stripe rust pathogen

Yulin Cheng, Hongchang Zhang, Juanni Yao, Xiaojie Wang, Jinrong Xu, Qingmei Han, Guorong Wei, Lili Huang, Zhensheng Kang 


Expression of 5 S rRNA genes linked to 35 S rDNA in plants, their epigenetic modification and regulatory element divergence

Sonia Garcia, Lucie Crhák Khaitová, Aleš Kovařík 


PeanutDB: an integrated bioinformatics web portal for Arachis hypogaea transcriptomics

Xiaohong Duan, Emily Schmidt, Pei Li, Douglas Lenox, Lin Liu, Changlong Shu, Jie Zhang, Chun Liang


Association mapping in sunflower for sclerotinia head rot resistance

Corina M. Fusari, Julio A. Di Rienzo, Carolina Troglia, Verónica Nishinakamasu, María Moreno, Carla Maringolo, Facundo Quiroz, Daniel Álvarez, Alberto Escande, Esteban Hopp, Ruth Heinz, Verónica V. Lia, Norma B. Paniego


Analysis of the P1 promoter in response to UV-B radiation in allelic variants of high-altitude maize

Sebastian Rius, Erich Grotewold, Paula Casati


QTL mapping reveals the genetic architecture of loci affecting pre- and post-zygotic isolating barriers in Louisiana Iris

Evangeline S. Ballerini, Amanda N. Brothers, Shunxue Tang, Steven J. Knapp, Amy Bouck, Sunni J. Taylor, Michael L. Arnold, Noland H. Martin


Genome-wide identification of differentially expressed genes under water deficit stress in upland cotton (Gossypium hirsutum L.)

Wonkeun Park, Brian E. Scheffler, Philip J. Bauer, B. Campbell


Phosphate Starvation of Maize Inhibits Lateral Root Formation and Alters Gene Expression in the Lateral Root Primordium Zone

Zhaoxia Li, Changzheng Xu, Kunpeng Li, Shi Yan, Xun Qu, Juren Zhang


The barley EST DNA Replication and Repair Database (bEST-DRRD) as a tool for the identification of the genes involved in DNA replication and repair

Damian Gruszka, Marek Marzec, Iwona Szarejko


Arabidopsis nonhost resistance gene PSS1 confers immunity against an oomycete and a fungal pathogen but not a bacterial pathogen that cause diseases in soybean

Rishi Sumit, Binod B. Sahu, Min Xu, Devinder Sandhu, Madan K. Bhattacharyya


Molecular interactions between the olive and the fruit fly Bactrocera oleave

Giandomenico Corrado, Fiammetta Alagna, Mariapina Rocco, Giovanni Renzone, Paola Varricchio, Valentina Coppola, Mariangela Coppola, Antonio Garanna, Luciana Baldoni, Andrea Scaloni, Rosa Rao


Analyses of the sucrose synthase gene family in cotton: structure, phylogeny and expression patterns

Aiqun Chen, Shae He, Feifei Li, Zhao Li, Mingquan Ding, Qingpo Liu, Junkang Rong


The organ-specific expression of terpene synthase genes contributes to the terpene hydrocarbon composition of chamomile essential oils

Sandra Irmisch, Sandra T. Krause, Grit Kunert, Jonathan Gershenzon, Jörg Degenhardt, Tobias G. Köllner


Interactions of an Arabidopsis RanBPM homologue with LisH-CTLH domain proteins revealed high conservation of CTLH complexes in eukaryotes

Eva Tomaštíková, Věra Cenklová, Lucie Kohoutová, Beáta Petrovská, Lenka Váchová, Petr Halada, Gabriela Kočárová, Pavla Binarová


Factors influencing fecundity in experimental crosses of water lotus (Nelumbo nucifera Gaertn.) cultivars

Nian-Jun Teng, Yan-Li Wang, Chun-Qing Sun, Wei-Min Fang, Fa-Di Chen


Myosins XI-K, XI-1, and XI-2 are required for development of pavement cells, trichomes, and stigmatic papillae in Arabidopsis

Eve-Ly Ojangu, Krista Tanner, Pille Pata, Kristel Järve, Carola L. Holweg, Erkki Truve, Heiti Paves


In silico polymorphism analysis for the development of simple sequence repeat and transposon markers and construction of linkage map in cultivated peanut

Kenta Shirasawa, Padmalatha Koilkonda, Koh Aoki, Hideki Hirakawa, Satoshi Tabata, Manabu Watanabe, Makoto Hasegawa, Hiroyuki Kiyoshima, Shigeru Suzuki, Chikara Kuwata, Yoshiki Naito, Tsutomu Kuboyama, Akihiro Nakaya, Shigemi Sasamoto, Akiko Watanabe, Midori Kato, Kumiko Kawashima, Yoshie Kishida, Mitsuyo Kohara, Atsushi Kurabayashi, Chika Takahashi, Hisano Tsuruoka, Tsuyuko Wada, Sachiko Isobe


The 5'UTR-intron of the Gladiolus polyubiquitin promoter GUBQ1 enhances translation efficiency in Gladiolus and Arabidopsis

Kathryn Kamo, Ah-Young Kim, Se Park, Young Joung


Co-ordinate regulation of cytokinin gene family members during flag leaf and reproductive development in wheat

Jiancheng Song, Lijun Jiang, Paula Jameson

sobota, 16 czerwca 2012

Annals of Botany - 109 (7), 2012






Contents:

ContentSnapshots

 Plant Cuttings
 Chaffey, Nigel

 Handbook of maize: its biology
 Kynast, Ralf G.

 Handbook of maize: genetics and genomics
 Kynast, Ralf G.

 Transgenic maize: methods and protocols
 Jones, Huw D.

 Water status and associated processes mark critical stages in pollen development and functioning
 Firon, Nurit; Nepi, Massimo; Pacini, Ettore

 The influence of pre- and post-zygotic barriers on interspecific Corymbia hybridization
 Dickinson, Geoffrey R.; Lee, David J.; Wallace, Helen M.

 Seed colour loci, homoeology and linkage groups of the C genome chromosomes revealed in Brassica rapa-B. oleracea monosomic alien addition lines
 Heneen, Waheeb K.; Geleta, Mulatu; Brismar, Kerstin; Xiong, Zhiyong; Pires, J. Chris; Hasterok, Robert; Stoute, Andrew I.; Scott, Roderick J.; King, Graham J.; Kurup, Smita

 Functional aspects of floral nectar secretion of Ananas ananassoides, an ornithophilous bromeliad from the Brazilian savanna
 Stahl, Juliana Marin; Nepi, Massimo; Galetto, Leonardo; Guimaraes, Elza; Machado, Silvia Rodrigues

 The cyanogenic syndrome in rubber tree Hevea brasiliensis: tissue-damage-dependent activation of linamarase and hydroxynitrile lyase accelerates hydrogen cyanide release
 Kadow, Daniel; Voß, Karsten; Selmar, Dirk; Lieberei, Reinhard

 Wait or escape? Contrasting submergence tolerance strategies of Rorippa amphibia, Rorippa sylvestris and their hybrid
 Akman, Melis; Bhikharie, Amit V.; McLean, Elizabeth H.; Boonman, Alex; Visser, Eric J. W.; Schranz, M. Eric; van Tienderen, Peter H.

 Genotypic differences in pod wall and seed growth relate to invertase activities and assimilate transport pathways in asparagus bean
 Liu, Yong-Hua; Cao, Jia-Shu; Li, Guo-Jing; Wu, Xiao-Hua; Wang, Bao-Gen; Xu, Pei; Hu, Ting-Ting; Lu, Zhong-Fu; Patrick, John W.; Ruan, Yong-Ling

 Floral development of Hydrocera and Impatiens reveals evolutionary trends in the most early diverged lineages of the Balsaminaceae
 Janssens, Steven B.; Smets, Erik F.; Vrijdaghs, Alexander

 Round and large: morphological and genetic consequences of artificial selection on the gourd tree Crescentia cujete by the Maya of the Yucatan Peninsula, Mexico
 Aguirre-Dugua, Xitlali; Eguiarte, Luis E.; González-Rodríguez, Antonio; Casas, Alejandro

 Peperomia leaf cell wall interface between the multiple hypodermis and crystal-containing photosynthetic layer displays unusual pit fields
 Horner, Harry T.

 A molecular phylogeny and classification of Leptochloa (Poaceae: Chloridoideae: Chlorideae) sensu lato and related genera
 Peterson, Paul M.; Romaschenko, Konstantin; Snow, Neil; Johnson, Gabriel

 Signal honesty and cost of pollinator rewards in Dalechampia scandens (Euphorbiaceae)
  Pélabon, Christophe; Thöne, Patrick; Hansen, Thomas F.; Armbruster, W. Scott

 Phylogenetic relationships and generic delimitation of Eurasian Aster (Asteraceae: Astereae) inferred from ITS, ETS and trnL-F sequence data
 Li, Wei-Ping; Yang, Fu-Sheng; Jivkova, Todorka; Yin, Gen-Shen

 Contemporary gene flow and mating system of Arabis alpina in a Central European alpine landscape
 Buehler, D.; Graf, R.; Holderegger, R.; Gugerli, F.

 Parental environment changes the dormancy state and karrikinolide response of Brassica tournefortii seeds
 Gorecki, M. J.; Long, R. L.; Flematti, G. R.; Stevens, J. C.

 A role for PHANTASTICA in medio-lateral regulation of adaxial domain development in tomato and tobacco leaves
 Zoulias, Nicholas; Koenig, Daniel; Hamidi, Ashley; McCormick, Sheila; Kim, Minsung

 Tests for the joint evolution of mating system and drought escape in Mimulus
 Ivey, Christopher T.; Carr, David E.

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środa, 14 marca 2012

Taxon - 61 (1), 2012



Contents:

Review

Western Eurasian-western North American disjunct plant taxa: The dry-adapted ends of formerly widespread north temperate mesic lineages—and examples of long-distance dispersal
Kadereit, Joachim W.; Baldwin, Bruce G.

Systematics and Phylogeny

Systematics and evolution of the needle grasses (Poaceae: Pooideae: Stipeae) based on analysis of multiple chloroplast loci, ITS, and lemma micromorphology
Romaschenko, Konstantin; Peterson, Paul M.; Soreng, Robert J.; Garcia-Jacas, Nuria; Futorna, Oksana; Susanna, Alfonso

Phylogenetic placement of the enigmatic orchid genera Thaia and Tangtsinia: Evidence from molecular and morphological characters
Xiang, Xiao-Guo; Li, De-Zhu; Jin, Wei-Tao; Zhou, Hai-Lang; Li, Jian-Wu; Jin, Xiao-Hua

Phylogeny and taxonomy of Tribulocarpus (Aizoaceae): A paraphyletic species and an adaptive shift from zoochorous trample burrs to anemochorous nuts
Thulin, Mats; Thiede, Joachim; Liede-Schumann, Sigrid

Bristly versus juicy: Phylogenetic position and taxonomy of Sphaerocoma (Caryophyllaceae)
Kool, Anneleen; Perrigo, Allison; Thulin, Mats

Mid-Miocene divergence of Ionopsidium and Cochlearia and its impact on the systematics and biogeography of the tribe Cochlearieae (Brassicaceae)
Koch, Marcus A.

Phylogeny and biogeography of Lonchocarpus sensu lato and its allies in the tribe Millettieae (Leguminosae, Papilionoideae)
da Silva, Marcos José; de Queiroz, Luciano Paganucci; Tozzi, Ana Maria Goulart de Azevedo; Lewis, Gwilym Peter; de Sousa, Anete Pereira

Phylogenetic inference of New Caledonian lineages of Sapindaceae: Molecular evidence requires a reassessment of generic circumscriptions
Buerki, Sven; Forest, Félix; Callmander, Martin W.; Lowry II, Porter P.; Devey, Dion S.; Munzinger, Jérôme

Infrageneric classification of Calibrachoa (Solanaceae) based on morphological and molecular evidence
Fregonezi, Jéferson Nunes; de Freitas, Loreta Brandao; Bonatto, Sandro L.; Semir, Joao; Stehmann, Joao Renato

Pollen morphology and phylogeny of the tribe Tabernaemontaneae (Apocynaceae, subfamily Rauvolfioideae)
van der Weide, Jasmijn C.; van der Ham, Raymond W.J.M.

Annual plants colonizing the Arctic? Phylogeography and genetic variation in the Euphrasia minima complex (Orobanchaceae)
Gussarova, Galina; Alsos, Inger Greve; Brochmann, Christian

Phylogeny of the tribe Phlomideae (Lamioideae: Lamiaceae) with special focus on Eremostachys and Phlomoides: New insights from nuclear and chloroplast sequences
Salmaki, Yasaman; Zarre, Shahin; Ryding, Olof; Lindqvist, Charlotte; Scheunert, Agnes; Bräuchler, Christian; Heubl, Günther

Phylogenetics of the Chiliotrichum group (Compositae: Astereae): The story of the fascinating radiation in the paleate Astereae genera from southern South America
Bonifacino, José M.; Funk, Vicki A.

Polyploidy, infraspecific cytotype variation, and speciation in Goldenrods: The cytogeography of Solidago subsect. Humiles (Asteraceae) in North America
Peirson, Jess A.; Reznicek, Anton A.; Semple, John C.

Phylogeny, biogeography, and chromosome evolution of the amphitropical genus Grindelia (Asteraceae) inferred from nuclear ribosomal and chloroplast sequence data
Moore, Abigail J.; Bartoli, Adriana; Tortosa, Roberto D.; Baldwin, Bruce G.

Automatic extraction of leaf characters from herbarium specimens
Corney, David P.A.; Clark, Jonathan Y.; Tang, H. Lilian; Wilkin, Paul

Guidelines for the preliminary evaluation of general nomenclature manuscripts submitted to Taxon
Moore, Gerry

Latin shaken, not stirred
Alves, Ruy José Válka; da Silva, Nílber Gonçalves; Pereira, Jorge Fontella

Lectotypification of the name Eleutheranthera ovata Poit. (Asteraceae: Ecliptinae)
Orchard, Anthony E.; Wilson, Annette J.G.

Guidelines for proposals to conserve or reject names
McNeill, John; Redhead, Scott A.; Wiersema, John H.

(2044) Proposal to conserve the name Agaricus tabescens against A. socialis (Basidiomycota)
Redhead, Scott A.; Antonín, Vladimír; Tomšovský, Michal; Volk, Thomas J.; Munda, Alenka; Piltaver, Andrej

(2045) Proposal to conserve the name Selaginella densa Rydb. against S. densa R. Sim (Selaginellaceae) with a note on S. apoda
Reveal, James L.; Gandhi, Kanchi N.

(2046) Proposal to conserve the name Celtis glabrata Steven ex Planch. against C. glabrata A. Spreng. (Cannabaceae) with a conserved type
Whittemore, Alan T.

(2047) Proposal to conserve the name Geranium pyrenaicum (Geraniaceae) with a conserved type
Aedo, Carlos; Fumeaux, Nicolas

(2048) Proposal to reject the name Oisodix fulva (Salicaceae)
Stuber, Stephanie M.; Lim, Gwynne S.; Gunner, Simon T.; Carvalho, Mónica R.; Reveal, James L.

Nomenclatural Novelties

Thanks to Our Reviewers

Plant Systematics World
Delmail, David; Chambet, Audrey; Boustie, Joël

Reviews and Notices of Publications
Schmid, Rudolf

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piątek, 21 maja 2010

Phylogeny of Saururaceae...

Shao-Wu Meng, Andrew W. Douglas, De-Zhu Li, Zhi-Duan Chen, Han-Xing, Liang, Jun-Bo Yang

Phylogeny of Saururaceae based on morphology and five regions from three plant genomes

ANN. MISSOURI BOT. GARD. 90: 592–602. 2003

ARTICLE ARTYKUŁ ARTICOLO


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środa, 24 lutego 2010

Phylogeny, taxonomic affinities, and biogeography of Penstemon (Plantaginaceae) based on ITS and cpDNA sequence data

Andrea D. Wolfe, Christopher P. Randle, Shannon L. Datwyler, Jeffery J. Morawetz, Nidia Arguedas, Jose Diaz


Phylogeny, taxonomic affinities, and biogeography of Penstemon (Plantaginaceae) based on ITS and cpDNA sequence data

American Journal of Botany 2006 93: 1699-1713.

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niedziela, 24 stycznia 2010

Evolution of shrub-like growth forms in the lianoid subfamily Secamonoideae ...

Renaud Lahaye, Laure Civeyrel, Thomas Speck, Nick P. Rowe

Evolution of shrub-like growth forms in the lianoid subfamily Secamonoideae (Apocynaceae s.l.) of Madagascar: phylogeny, biomechanics, and development

American Journal of Botany 2005 92: 1381-1396.

Article Artykuł Articolo

niedziela, 10 stycznia 2010

The molecular phylogeny of Rebutia (Cactaceae) ...

Christiane M. Ritz, Ludwig Martins, Rainer Mecklenburg, Vadim Goremykin, Frank H. Hellwig
The molecular phylogeny of Rebutia (Cactaceae) and its allies demonstrates the influence of paleogeography on the evolution of South American mountain cacti

American Journal of Botany 2007 94: 1321-1332.