Genome Biology and Evolution - 4 (2), 2012

Contents:

Research Articles

        Shelley D. Copley, Joseph Rokicki, Pernilla Turner, Hajnalka Daligault, Matt Nolan, and Miriam Land
    The Whole Genome Sequence of Sphingobium chlorophenolicum L-1: Insights into the Evolution of the Pentachlorophenol Degradation Pathway
   
        Cheng Sun, Donald B. Shepard, Rebecca A. Chong, José López Arriaza, Kathryn Hall, Todd A. Castoe, Cédric Feschotte, David D. Pollock, and Rachel Lockridge Mueller
    LTR Retrotransposons Contribute to Genomic Gigantism in Plethodontid Salamanders
   
        M. Ollivier, T. Gabaldón,J. Poulain, F. Gavory, N. Leterme, J.-P. Gauthier, F. Legeai, D. Tagu, J. C. Simon, and C. Rispe
    Comparison of Gene Repertoires and Patterns of Evolutionary Rates in Eight Aphid Species That Differ by Reproductive Mode
  
        Estienne C. Swart, Mariusz Nowacki, Justine Shum, Heather Stiles, Brian P. Higgins, Thomas G. Doak, Klaas Schotanus, Vincent J. Magrini, Patrick Minx, Elaine R. Mardis, and Laura F. Landweber
    The Oxytricha trifallax Mitochondrial Genome
  
        George H. Perry, Darryl Reeves, Páll Melsted, Aakrosh Ratan, Webb Miller, Katelyn Michelini, Edward E. Louis, Jr, Jonathan K. Pritchard, Christopher E. Mason, and Yoav Gilad
    A Genome Sequence Resource for the Aye-Aye (Daubentonia madagascariensis), a Nocturnal Lemur from Madagascar
  
        Małgorzata Wojtkowska, Marcin Jąkalski, Joanna R. Pieńkowska, Olgierd Stobienia, Andonis Karachitos, Teresa M. Przytycka, January Weiner (3), Hanna Kmita, and Wojciech Makałowski
    Phylogenetic Analysis of Mitochondrial Outer Membrane ß-Barrel Channels
  
        Andrew T. Beckenbach
    Mitochondrial Genome Sequences of Nematocera (Lower Diptera): Evidence of Rearrangement following a Complete Genome Duplication in a Winter Crane Fly
   
        Thomas E. Keller, S. David Mis, Kevin E. Jia, and Claus O. Wilke
    Reduced mRNA Secondary-Structure Stability Near the Start Codon Indicates Functional Genes in Prokaryotes
   
Letters

        Courtney C. Babbitt, Jenny Tung, Gregory A. Wray and Susan C. Alberts
    Changes in Gene Expression Associated with Reproductive Maturation in Wild Female Baboons
   
============

Annals of Botany - 109 (4), 2012

Contents:

ContentSnapshots

Plant Cuttings
 Chaffey, Nigel

Maximum likelihood inference implies a high, not a low, ancestral haploid chromosome number in Araceae, with a critique of the bias introduced by `x'
 Cusimano, Natalie; Sousa, Aretuza; Renner, Susanne S.

Accelerated evolution and coevolution drove the evolutionary history of AGPase sub-units during angiosperm radiation
 Corbi, Jonathan; Dutheil, Julien Y.; Damerval, Catherine; Tenaillon, Maud I.; Manicacci, Domenica

Reproductive isolation and hybridization in sympatric populations of three Dactylorhiza species (Orchidaceae) with different ploidy levels
 De Hert, Koen; Jacquemyn, Hans; Van Glabeke, Sabine; Roldán-Ruiz, Isabel; Vandepitte, Katrien; Leus, Leen; Honnay, Olivier

Annual increments of juniper dwarf shrubs above the tree line on the central Tibetan Plateau: a useful climatic proxy
 Liang, Eryuan; Lu, Xiaoming; Ren, Ping; Li, Xiaoxia; Zhu, Liping; Eckstein, Dieter

Seed banks on Attalea phalerata (Arecaceae) stems in the Pantanal wetland, Brazil
 Correa, Christiane E.; Fischer, Erich; Santos, Flavio A. M. dos

Acidic ?-galactosidase is the most abundant nectarin in floral nectar of common tobacco (Nicotiana tabacum)
 Zha, Hong-Guang; Flowers, V. Lynn; Yang, Min; Chen, Ling-Yang; Sun, Hang

Quantitative trait loci for seed yield and yield-related traits, and their responses to reduced phosphorus supply in Brassica napus
 Ding, Guangda; Zhao, Zunkang; Liao, Yuan; Hu, Yifan; Shi, Lei; Long, Yan; Xu, Fangsen

Floral traits mediate the vulnerability of aloes to pollen theft and inefficient pollination by bees
 Hargreaves, Anna L.; Harder, Lawrence D.; Johnson, Steven D.

Amplification, contraction and genomic spread of a satellite DNA family (E180) in Medicago (Fabaceae) and allied genera
 Rosato, Marcela; Galián, José A.; Rosselló, Josep A.

The multiple fuzzy origins of woodiness within Balsaminaceae using an integrated approach. Where do we draw the line?
 Lens, Frederic; Eeckhout, Sharon; Zwartjes, Rosa; Smets, Erik; Janssens, Steven B.

Mineral nutrient stoichiometric variability in Hedera helix (Araliaceae) seeds
 Obeso, José Ramón

Restoration of tensile strength in bark samples of Ficus benjamina due to coagulation of latex during fast self-healing of fissures
 Bauer, Georg; Speck, Thomas

Effects of soil nutrient heterogeneity on intraspecific competition in the invasive, clonal plant Alternanthera philoxeroides
 Zhou, Jian; Dong, Bi-Cheng; Alpert, Peter; Li, Hong-Li; Zhang, Ming-Xiang; Lei, Guang-Chun; Yu, Fei-Hai

Physiological, biochemical and transcriptional analysis of onion bulbs during storage
 Chope, Gemma A.; Cools, Katherine; Hammond, John P.; Thompson, Andrew J.; Terry, Leon A.

The effect of environmental heterogeneity on RPW8-mediated resistance to powdery mildews in Arabidopsis thaliana
 Jorgensen, Tove H.

Asynchronous flowering and within-plant flowering diversity in wheat and the implications for crop resilience to heat
 Lukac, Martin; Gooding, Michael J.; Griffiths, Simon; Jones, Hannah E.

+++++++++++++++

Taxon - 60 (5), 2011

Contents:

Parental divergence and hybrid speciation in angiosperms revisited
Paun, Ovidiu; Forest, Félix; Fay, Michael F.; Chase, Mark W.

Micromitriaceae: A new family of highly reduced mosses
Goffinet, Bernard; Budke, Jessica M.; Newman, Leah C.

Redefinition of Adiantopsis Fée (Pteridaceae): Systematics, diversification, and biogeography
Link-Pérez, Melanie A.; Watson, Linda E.; Hickey, R. James

Evidence for radiations of cheilanthoid ferns in the Greater Cape Floristic Region
Eiserhardt, Wolf L.; Rohwer, Jens G.; Russell, Stephen J.; Yesilyurt, Jovita C.; Schneider, Harald

Relationships and evolutionary origins of polyploid Dryopteris (Dryopteridaceae) from Europe inferred using nuclear pgiC and plastid trnL-F sequence data
Juslén, Aino; Väre, Henry; Wikström, Niklas

Molecular phylogeography of Thymus herba-barona (Lamiaceae): Insight into the evolutionary history of the flora of the western Mediterranean islands
Molins, Arántzazu; Bacchetta, Gianluigi; Rosato, Marcela; Rosselló, Josep A.; Mayol, Maria

Canary grasses (Phalaris, Poaceae): Molecular phylogenetics, polyploidy and floret evolution
Voshell, Stephanie M.; Baldini, Riccardo M.; Kumar, Rohit; Tatalovich, Nicholas; Hilu, Khidir W.

Phylogeny of the subtribe Hyptidinae (Lamiaceae tribe Ocimeae) as inferred from nuclear and plastid DNA
Pastore, José Floriano Barea; Harley, Raymond M.; Forest, Félix; Paton, Alan; van den Berg, Cássio

The status of Urocarpidium (Malvaceae): Insight from nuclear and plastid-based phylogenies
Tate, Jennifer A.

Biosystematic studies on the family Tofieldiaceae III. Classification of Tofieldia nuda into three species and three varieties
Tamura, Minoru N.; Fuse, Shizuka; Lee, Nam Sook; Kim, Jin Ohk; Yamashita, Jun; Ishii, Takaaki

A phylogenetic analysis of the genus Colchicum L. (Colchicaceae) based on sequences from six plastid regions
Persson, Karin; Petersen, Gitte; del Hoyo, Alberto; Seberg, Ole; Jorgensen, Tina

Systematics of the genus Salweenia (Leguminosae) from Southwest China with discovery of a second species
Yue, Xue-Kun; Yue, Ji-Pei; Yang, Li-Er; Li, Zhi-Min; Sun, Hang

Origin and diversification of the genus Echium (Boraginaceae) in the Cape Verde archipelago
Romeiras, Maria M.; Paulo, Octávio S.; Duarte, M. Cristina; Pina-Martins, Francisco; Cotrim, M. Helena; Carine, Mark A.; Pais, M. Salomé

Newmania: A new ginger genus from central Vietnam
Leong-Škorničková, Jana; Lý, Ngoc-Sâm; Poulsen, Axel Dalberg; Tosh, James; Forrest, Alan

Molecular systematics and incongruent gene trees of Urophylleae (Rubiaceae)
Smedmark, Jenny E.E.; Bremer, Birgitta

Phylogenetic affinities of Polyalthia species (Annonaceae) with columellar-sulcate pollen: Enlarging the Madagascan endemic genus Fenerivia
Saunders, Richard M.K.; Su, Yvonne C.F.; Xue, Bine

Molecular systematics and character evolution of Typha (Typhaceae) inferred from nuclear and plastid DNA sequence data
Kim, Changkyun; Choi, Hong-Keun

Molecular delimitation of clades within New World species of the "spiny solanums" (Solanum subg. Leptostemonum)
Stern, Stephen; Agra, Maria de Fátima; Bohs, Lynn

A simple and cost-effective approach for microsatellite isolation in non-model plant species using small-scale 454 pyrosequencing
Takayama, Koji; López, Patricio S.; König, Christiane; Kohl, Gudrun; Novak, Johannes; Stuessy, Tod F.

Morphology-based phylogenetic binning of the lichen genera Graphis and Allographa (Ascomycota: Graphidaceae) using molecular site weight calibration
Berger, Simon A.; Stamatakis, Alexandros; Lücking, Robert

Dates of publication of Scripta Botanica
Doweld, Alexander B.

Typification of names of taxa of Bauhinia L. (Leguminosae: Cercideae) from Brazil
Vaz, Angela Maria Studart da Fonseca

Typification of the name Papaver hybridum L. (Papaveraceae)
Aghababyan, Mariam; Raimondo, Francesco M.

Typification of the name Cynoglossum creticum Mill. (Boraginaceae)
Selvi, Federico; Jarvis, Charles E.

Revised lectotypification of Reseda glauca L. (Resedaceae)
Martín-Bravo, Santiago; Jiménez-Mejías, Pedro; Jarvis, Charles E.

Revised lectotypification of Spartium scoparium L. (Fabaceae)
Auvray, Gaëlle; Malécot, Valéry

The valid publication of the name Euaraliopsis (Araliaceae)
Deng, Yun-Fei

Chamerion or Chamaenerion (Onagraceae)? The old story in new words
Sennikov, Alexander N.

Nomenclature and taxonomy of Croton glabellus L. (Euphorbiaceae), a widespread Caribbean species
van Ee, Benjamin; Gandhi, Kanchi N.; Berry, Paul E.

Major changes to the Code of Nomenclature—Melbourne, July 2011
McNeill, John; Turland, Nicholas J.

Changes to publication requirements made at the XVIII International Botanical Congress in Melbourne: What does e-publication mean for you?
Knapp, Sandra; McNeill, John; Turland, Nicholas J.

English and Latin as alternative languages for validating the names of organisms covered by the International Code of Nomenclature for algae, fungi, and plants: The final chapter?
Smith, Gideon F.; Figueiredo, Estrela; Moore, Gerry

Conserving Acacia Mill. with a conserved type: What happened in Melbourne?
Smith, Gideon F.; Figueiredo, Estrela

XVIII International Botanical Congress: Preliminary mail vote and report of Congress action on nomenclature proposals
McNeill, John; Turland, Nicholas J.; Monro, Anna M.; Lepschi, Brendan J.

(2028) Proposal to conserve the name Stichorkis (Orchidaceae, Malaxideae) with a conserved type
Schuiteman, André; Pedersen, Henrik; Friis, Ib

(2029) Proposal to conserve the name Meiogyne against Fitzalania (Annonaceae)
Chaowasku, Tanawat; Zijlstra, Gea; Chatrou, Lars W.

(2030) Proposal to conserve the name Solanum torvum (Solanaceae) with a conserved type
Knapp, Sandra

Erratum to Taxon 60(3)
Middleton, David J.

Erratum to Taxon 60(4)
Leong-Škorničková, Jana

New names and combinations appearing in Taxon 60 (5)

Plant Systematics World

Reviews and Notices of Publications


New names and combinations appearing in Taxon 60 (5):
Adiantopsis flexuosa (Kunze) Link-Pérez & Hickey, comb. nov.
Adiantopsis tweediana (Hook.) Link-Pérez & Hickey, comb. nov.
Croton glabellus subsp. polytrichus (Urb.) B.W. van Ee, comb. et stat. nov.
Echium stenosiphon subsp. glabrescens (Pett.) Romeiras & M.C. Duarte, comb. et stat. nov.
Fenerivia angustielliptica (G.E. Schatz & Le Thomas) R.M.K. Saunders, comb. nov.
Fenerivia capuronii (Cavaco & Keraudren) R.M.K. Saunders, comb. nov.
Fenerivia chapelieri (Baill.) R.M.K. Saunders, comb. nov.
Fenerivia emarginata (Diels) R.M.K. Saunders, comb. nov.
Fenerivia ghesquiereana (Cavaco & Keraudren) R.M.K. Saunders, comb. nov.
Fenerivia humbertii (Cavaco & Keraudren) R.M.K. Saunders, comb. nov.
Fenerivia madagascariensis (Cavaco & Keraudren) R.M.K. Saunders, comb. nov.
Fenerivia oligosperma (Danguy) R.M.K. Saunders, comb. nov.
Fenerivia richardiana (Baill.) R.M.K. Saunders, comb. nov.
Henckelia dielsii (Borza) D.J. Middleton & Mich. Möller, comb. nov.
Micromitriaceae Smyth ex Goffinet & Budke, fam. nov.
Newmania N.S. Lý & Škorničk., gen. nov.
Newmania orthostachys N.S. Lý & Škorničk., sp. nov.
Newmania serpens N.S. Lý & Škorničk., sp. nov.
Pauridiantha arcuata (S.E. Dawson) Smedmark & B. Bremer, comb. nov.
Pauridiantha cauliflora (R.D. Good) Smedmark & B. Bremer, comb. nov.
Pauridiantha crystallina (N. Hallé) Smedmark & B. Bremer, comb. nov.
Pauridiantha makakana (N. Hallé) Smedmark & B. Bremer, comb. nov.
Pauridiantha schumannii (Bremek.) Smedmark & B. Bremer, comb. nov.
Pauridiantha setiflora (R.D. Good) Smedmark & B. Bremer, comb. nov.
Salweenia bouffordiana H. Sun, Z.M. Li & J.P. Yue, sp. nov.
Tofieldia furusei (Hiyama) M.N. Tamura & Fuse, stat. nov.
Tofieldia yoshiiana Makino var. hyugaensis M.N. Tamura & Fuse, var. nov.
Tofieldia yoshiiana Makino var. kanwonensis (T. Yamaz.) M.N. Tamura, Fuse & N.S. Lee, comb. nov.
Urophyllum assahanicum (Bremek.) Smedmark & B. Bremer, comb. nov.
Urophyllum chlamydanthum (Bremek.) Smedmark & B. Bremer, comb. nov.
Urophyllum clemensiorum Smedmark & B. Bremer, nom. nov.
Urophyllum coffeoides (Bremek.) Smedmark & B. Bremer, comb. nov.
Urophyllum corniculatum (Bremek.) Smedmark & B. Bremer, comb. nov.
Urophyllum deliense (Bremek.) Smedmark & B. Bremer, comb. nov.
Urophyllum elmeri (Bremek.) Smedmark & B. Bremer, comb. nov.
Urophyllum endertii (Bremek.) Smedmark & B. Bremer, comb. nov.
Urophyllum holectomium (Bremek.) Smedmark & B. Bremer, comb. nov.
Urophyllum kinabaluense (Bremek.) Smedmark & B. Bremer, comb. nov.
Urophyllum lanaense (Merr.) Smedmark & B. Bremer, comb. nov.
Urophyllum leucocarpum (Bremek.) Smedmark & B. Bremer, comb. nov.
Urophyllum macrurum (Bremek.) Smedmark & B. Bremer, comb. nov.
Urophyllum magnifolium (Bremek.) Smedmark & B. Bremer, comb. nov.
Urophyllum maingayi (King & Gamble) Smedmark & B. Bremer, comb. nov.
Urophyllum opacum (Bremek.) Smedmark & B. Bremer, comb. nov.
Urophyllum parvistipulum (Bremek.) Smedmark & B. Bremer, comb. nov.
Urophyllum rufescens (Bremek.) Smedmark & B. Bremer, comb. nov.
Urophyllum sandahanicum (Bremek.) Smedmark & B. Bremer, comb. nov.
Urophyllum sintangense (Bremek.) Smedmark & B. Bremer, comb. nov.
+++++++++++++++

Reticulate evolution in Kiwifruit...

JOELLE CHAT, BLANCA JAUREGUI, REMY J. PETIT, SOPHIE NADOT

RETICULATE EVOLUTION IN KIWIFRUIT (ACTINIDIA, ACTINIDIACEAE) IDENTIFIED BY COMPARING THEIR MATERNAL AND PATERNAL PHYLOGENIES

American Journal of Botany 91(5): 736–747. 2004.

ARTICOLO ARTYKUŁ ARTICLE

Hybridization, polyploidy, and evolutionary transitions between monoecy and dioecy in Bryonia (Cucurbitaceae)

Stefanie M. Volz, Susanne S. Renner

Hybridization, polyploidy, and evolutionary transitions between monoecy and dioecy in Bryonia (Cucurbitaceae)

American Journal of Botany 2008 95: 1297-1306.

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