Genome Biology and Evolution - 4 (12), 2012

Contents:

Research Articles

        Kyanne R. Reidenbach, Daniel E. Neafsey, Carlo Costantini, N’Fale Sagnon, Frédéric Simard, Gregory J. Ragland, Scott P. Egan, Jeffrey L. Feder, Marc A. T. Muskavitch, and Nora J. Besansky
    Patterns of Genomic Differentiation between Ecologically Differentiated M and S Forms of Anopheles gambiae in West and Central Africa
  
        Onuralp Soylemez and Fyodor A. Kondrashov
    Estimating the Rate of Irreversibility in Protein Evolution
  
        David Williams, J. Peter Gogarten, and R. Thane Papke
    Quantifying Homologous Replacement of Loci between Haloarchaeal Species
   
        Yu-Ping Poh, Chau-Ti Ting, Hua-Wen Fu, Charles H. Langley, and David J. Begun
    Population Genomic Analysis of Base Composition Evolution in Drosophila melanogaster
   
        Jarrett D. Morrow and Vaughn S. Cooper
    Evolutionary Effects of Translocations in Bacterial Genomes
  
        David Alvarez-Ponce and Mario A. Fares
    Evolutionary Rate and Duplicability in the Arabidopsis thaliana Protein–Protein Interaction Network
   
        Anne-Catrin Uhlemann, Adam D. Kennedy, Craig Martens, Stephen F. Porcella, Frank R. DeLeo, and Franklin D. Lowy
    Toward an Understanding of the Evolution of Staphylococcus aureus Strain USA300 during Colonization in Community Households
  
        Sabrina Simon, Apurva Narechania, Rob DeSalle, and Heike Hadrys
    Insect Phylogenomics: Exploring the Source of Incongruence Using New Transcriptomic Data
    
        José R. López Arriaza, and Rachel Lockridge Mueller
    Slow DNA Loss in the Gigantic Genomes of Salamanders
   
        Danielle Venton
    Highlight—Making It Big: Salamanders Keep DNA Near and Dear
 
        Christopher Grosche, Helena T. Funk, Uwe G. Maier, and Stefan Zauner
    The Chloroplast Genome of Pellia endiviifolia: Gene Content, RNA-Editing Pattern, and the Origin of Chloroplast Editing
   
        Aitor Gonzaga, Ana-Belen Martin-Cuadrado, Mario López-Pérez, Carolina Megumi Mizuno, Inmaculada García-Heredia, Nikole E. Kimes, Purificación Lopez-García, David Moreira, David Ussery, Mila Zaballos, Rohit Ghai, and Francisco Rodriguez-Valera
    Polyclonality of Concurrent Natural Populations of Alteromonas macleodii
   
        Olga K. Kamneva, Stormy J. Knight, David A. Liberles, and Naomi L. Ward
    Analysis of Genome Content Evolution in PVC Bacterial Super-Phylum: Assessment of Candidate Genes Associated with Cellular Organization and Lifestyle
   
        Julia F. Hopkins, David F. Spencer, Sylvie Laboissiere, Jonathan A.D. Neilson, Robert J.M. Eveleigh, Dion G. Durnford, Michael W. Gray, and John M. Archibald
    Proteomics Reveals Plastid- and Periplastid-Targeted Proteins in the Chlorarachniophyte Alga Bigelowiella natans
   
Letter

        Yuri I. Wolf and Eugene V. Koonin
    A Tight Link between Orthologs and Bidirectional Best Hits in Bacterial and Archaeal Genomes
   
        Thomas Schott, Pradeep Kumar Kondadi, Marja-Liisa Hänninen, and Mirko Rossi
    Microevolution of a Zoonotic Helicobacter Population Colonizing the Stomach of a Human Host before and after Failed Treatment
   
        Ibrar Ahmed, Patrick J. Biggs, Peter J. Matthews, Lesley J. Collins, Michael D. Hendy, and Peter J. Lockhart
    Mutational Dynamics of Aroid Chloroplast Genomes
    
        Patrícia Isabel Marques, Rui Bernardino, Teresa Fernandes, Eric D. Green, Belen Hurle, Victor Quesada, Susana Seixas and NISC Comparative Sequencing Program
    Birth-and-Death of KLK3 and KLK2 in Primates: Evolution Driven by Reproductive Biology
   
        Niyaz Yoosuf, Natalya Yutin, Philippe Colson, Svetlana A. Shabalina, Isabelle Pagnier, Catherine Robert, Said Azza, Thomas Klose, Jimson Wong, Michael G. Rossmann, Bernard La Scola, Didier Raoult, and Eugene V. Koonin
    Related Giant Viruses in Distant Locations and Different Habitats: Acanthamoeba polyphaga moumouvirus Represents a Third Lineage of the Mimiviridae That Is Close to the Megavirus Lineage
  
Erratum

        Danielle Venton
    Highlight—Lowly Sea Cucumber Leads the Evolutionary Race
   
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Global Ecology and Biogeography - 21 (11), 2012

Contents:

        Global analysis of satellite tracking data shows that adult green turtles are significantly aggregated in Marine Protected Areas 

        Rebecca Scott, David J. Hodgson, Matthew J. Witt, Michael S. Coyne, Windia Adnyana, Janice M. Blumenthal, Annette C. Broderick, Ali Fuat Canbolat, Paulo Catry, Stephane Ciccione, Eric Delcroix, Creusa Hitipeuw, Paolo Luschi, L. Pet-Soede, Kellie Pendoley, Peter B. Richardson, Alan F. Rees and Brendan J. Godley

       
        Predicting the century-long post-fire responses of reptiles

        Dale. G. Nimmo, Luke T. Kelly, Lisa M. Spence-Bailey, Simon J. Watson, Angie Haslem, John G. White, Mike F. Clarke and Andrew F. Bennett

      
        Fuel shapes the fire–climate relationship: evidence from Mediterranean ecosystems 

        Juli G. Pausas and Susana Paula

       
        Geographic isolation and climate govern the functional diversity of native fish communities in European drainage basins 

        Diana Schleuter, Martin Daufresne, Jacques Veslot, Norman W. H. Mason, Cédric Lanoiselée, Sébastien Brosse, Olivier Beauchard and Christine Argillier

        
        Exploring the phylogenetic history of mammal species richness 

        T. Jonathan Davies and Lauren B. Buckley

       
        Dispersal ability modulates the strength of the latitudinal richness gradient in European beetles

        Andrés Baselga, Jorge M. Lobo, Jens-Christian Svenning, Pedro Aragón and Miguel B. Araújo

       
        Using avatar species to model the potential distribution of emerging invaders 

        Eric R. Larson and Julian D. Olden

       
        Invasive species distribution models – how violating the equilibrium assumption can create new insights 

        Laure Gallien, Rolland Douzet, Steve Pratte, Niklaus E. Zimmermann and Wilfried Thuiller

      
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