Genome Biology and Evolution

W roczniku 2009 Genome Biology and Evolution można poczytać o :
Adrian Schneider, Alexander Souvorov, Niv Sabath, Giddy Landan, Gaston H. Gonnet, Dan Graur - Estimates of Positive Darwinian Selection Are Inflated by Errors in Sequencing, Annotation, and Alignment

Andrej Benjak, Stéphanie Boué, Astrid Forneck, Josep M. Casacuberta - Recent amplification and impact of MITEs on the genome of grapevine (Vitis vinifera L.)

Andrew T. Beckenbach Jeffrey B. Joy - Evolution of the Mitochondrial Genomes of Gall Midges (Diptera: Cecidomyiidae): Rearrangement and Severe Truncation of tRNA Genes
Benjamin Dickins, Anton Nekrutenko - High-Resolution Mapping of Evolutionary Trajectories in a Phage

Catherine J. Pink, Siva K. Swaminathan, Ian Dunham, Jane Rogers, Andrew Ward, Laurence D. Hurst - Evidence That Replication-Associated Mutation Alone Does Not Explain Between-Chromosome Differences In Substitution Rates

Cédric Feschotte, Umeshkumar Keswani, Nirmal Ranganathan, Marcel L. Guibotsy, David Levine - Exploring Repetitive DNA Landscapes Using REPCLASS, a Tool That Automates the Classification of Transposable Elements in Eukaryotic Genomes

Cheong Xin Chan, Robert G. Beiko, Aaron E. Darling, Mark A. Ragan - Lateral Transfer of Genes and Gene Fragments in Prokaryotes

Chih-Horng Kuo, Howard Ochman - Deletional Bias across the Three Domains of Life

Chun-Hsi Chen, Trees-Juen Chuang, Ben-Yang Liao, Feng-Chi Chen - Scanning for the Signatures of Positive Selection for Human-Specific Insertions and Deletions

Claire Lemaitre, Marilia D. V. Braga, Christian Gautier, Marie-France Sagot, Eric Tannier, Gabriel A. B. Marais - Footprints of Inversions at Present and Past Pseudoautosomal Boundaries in Human Sex Chromosomes

Claudia C. Weber, Laurence D. Hurst - Protein Rates of Evolution Are Predicted by Double-Strand Break Events, Independent of Crossing-over Rates

Daniel A. Skelly, James Ronald, Caitlin F. Connelly, Joshua M. Akey - Population Genomics of Intron Splicing in 38 Saccharomyces cerevisiae Genome Sequences

Dong Dong, Guimei He, Shuyi Zhang, Zhaolei Zhang - Evolution of Olfactory Receptor Genes in Primates Dominated by Birth-and-Death Process
Editorial Board. Genome Biology and Evolution

Elie Desmond, Simonetta Gribaldo - Phylogenomics of Sterol Synthesis: Insights into the Origin, Evolution, and Diversity of a Key Eukaryotic Feature

Fabien Burki, Yuji Inagaki, Jon Bråte, John M. Archibald, Patrick J. Keeling, Thomas Cavalier-Smith, Miako Sakaguchi, Tetsuo Hashimoto, Ales Horak, Surendra Kumar, Dag Klaveness, Kjetill S. Jakobsen, Jan Pawlowski, Kamran Shalchian-Tabrizi - Large-Scale Phylogenomic Analyses Reveal That Two Enigmatic Protist Lineages, Telonemia and Centroheliozoa, Are Related to Photosynthetic Chromalveolates
George E. Liu, Lu Jiang, Fei Tian, Bin Zhu, Jiuzhou Song - Calibration of Mutation Rates Reveals Diverse Subfamily Structure of Galliform CR1 Repeats

Hui Cai, Rebecca Thompson, Mateo F. Budinich, Jeff R. Broadbent, James L. Steele - Genome Sequence and Comparative Genome Analysis of Lactobacillus casei: Insights into Their Niche-Associated Evolution

Igor B. Rogozin, Malay Kumar Basu, Miklós Csürös, Eugene V. Koonin - Analysis of Rare Genomic Changes Does Not Support the Unikont–Bikont Phylogeny and Suggests Cyanobacterial Symbiosis as the Point of Primary Radiation of Eukaryotes

Ingo Braasch, Frédéric Brunet, Jean-Nicolas Volff, Manfred Schartl - Pigmentation Pathway Evolution after Whole-Genome Duplication in Fish

István Miklós, Aaron E. Darling - Efficient Sampling of Parsimonious Inversion Histories with Application to Genome Rearrangement in Yersinia

James J. Cai, Elhanan Borenstein, Rong Chen, Dmitri A. Petrov - Similarly Strong Purifying Selection Acts on Human Disease Genes of All Evolutionary Ages

Jan A. C. Vriezen, Michael Valliere, Margaret A. Riley - The Evolution of Reduced Microbial Killing

Jeffrey D. Jensen - On Reconciling Single and Recurrent Hitchhiking Models

Jochen B. W. Wolf, Axel Künstner, Kiwoong Nam, Mattias Jakobsson, Hans Ellegren - Nonlinear Dynamics of Nonsynonymous (dN) and Synonymous (dS) Substitution Rates Affects Inference of Selection

Kousuke Hanada, Takashi Kuromori, Fumiyoshi Myouga, Tetsuro Toyoda, Wen-Hsiung Li, Kazuo Shinozaki - Evolutionary Persistence of Functional Compensation by Duplicate Genes in Arabidopsis.

Liran Carmel, Eugene V. Koonin - A Universal Nonmonotonic Relationship between Gene Compactness and Expression Levels in Multicellular Eukaryotes

M. Ziemann, M. Bhave, S. Zachgo - Origin and Diversification of Land Plant CC-Type Glutaredoxins

Marc P. Hoeppner, Simon White, Daniel C. Jeffares, Anthony M. Poole - Evolutionarily Stable Association of Intronic snoRNAs and microRNAs with Their Host Genes
Michael S. Barker, Heiko Vogel, M. Eric Schranz - Paleopolyploidy in the Brassicales: Analyses of the Cleome Transcriptome Elucidate the History of Genome Duplications in Arabidopsis and Other Brassicales

Mihai Albu, Xiang Jia Min, G. Brian Golding, and Donal Hickey - Nucleotide Substitution Bias within the Genus Drosophila Affects the Pattern of Proteome Evolution
Mina Rho, Mo Zhou, Xiang Gao, Sun Kim, Haixu Tang, Michael Lynch - Independent Mammalian Genome Contractions Following the KT Boundary

Natalie Donaher, Goro Tanifuji, Naoko T. Onodera, Stephanie A. Malfatti, Patrick S. G. Chain, Yoshiaki Hara, John M. Archibald - The Complete Plastid Genome Sequence of the Secondarily Nonphotosynthetic Alga Cryptomonas paramecium: Reduction, Compaction, and Accelerated Evolutionary Rate

Olga Zhaxybayeva, W. Ford Doolittle, R. Thane Papke, J. Peter Gogarten - Intertwined Evolutionary Histories of Marine Synechococcus and Prochlorococcus marinus

Pascal-Antoine Christin, Emanuela Samaritani, Blaise Petitpierre, Nicolas Salamin, Guillaume Besnard - Evolutionary Insights on C4 Photosynthetic Subtypes in Grasses from Genomics and Phylogenetics

Paz Polak, Peter F. Arndt - Long-Range Bidirectional Strand Asymmetries Originate at CpG Islands in the Human Genome

Richard P. Meisel, Mira V. Han, Matthew W. Hahn - A Complex Suite of Forces Drives Gene Traffic from Drosophila X Chromosomes

Robert C. Karn, Christina M. Laukaitis - The Mechanism of Expansion and the Volatility it created in Three Pheromone Gene Clusters in the Mouse (Mus musculus) Genome

Sara C. Di Rienzi, David Collingwood, M. K. Raghuraman, Bonita J. Brewer - Fragile Genomic Sites Are Associated with Origins of Replication

Takashi Gojobori, William Martin - Welcome to Genome Biology and Evolution
Timothy B. Sackton, Rob J. Kulathinal, Casey M. Bergman, Aaron R. Quinlan, Erik B. Dopman, Mauricio Carneiro, Gabor T. Marth, Daniel L. Hartl, Andrew G. Clark - Population Genomic Inferences from Sparse High-Throughput Sequencing of Two Populations of Drosophila melanogaster

Vanessa L. Bauer DuMont, Nadia D. Singh, Mark H. Wright, Charles F. Aquadro - Locus-Specific Decoupling of Base Composition Evolution at Synonymous Sites and Introns along the Drosophila melanogaster and Drosophila sechellia Lineages

W. A. Findlay, R. J. Redfield - Coevolution of DNA Uptake Sequences and Bacterial Proteomes

Wenfeng Qian Jianzhi Zhang - Protein Subcellular Relocalization in the Evolution of Yeast Singleton and Duplicate Genes

Wolfgang Otto, Peter F. Stadler, Francesc López-Giraldéz, Jeffrey P. Townsend, Vincent J. Lynch, and Günter P. Wagner - Measuring Transcription Factor–Binding Site Turnover: A Maximum Likelihood Approach Using Phylogenies

Xiaowei (Sylvia) Chen, Lesley J. Collins, Patrick J. Biggs, David Penny - High Throughput Genome-Wide Survey of Small RNAs from the Parasitic Protists Giardia intestinalis and Trichomonas vaginalis

Yoshihito Niimura - On the Origin and Evolution of Vertebrate Olfactory Receptor Genes: Comparative Genome Analysis Among 23 Chordate Species

Zhi Wang and Jianzhi Zhang - Abundant Indispensable Redundancies in Cellular Metabolic Networks




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