Molecular Biology and Evolution - 28 (1), 2011

Contents:

Letters

D. Erpenbeck, O. Voigt, M. Adamski, B.J. Woodcroft, J.N.A. Hooper, G. Wörheide and B.M. Degnan
NUMTs in the Sponge Genome Reveal Conserved Transposition Mechanisms in Metazoans

Huabin Zhao, Dong Xu, Shuyi Zhang and Jianzhi Zhang
Widespread Losses of Vomeronasal Signal Transduction in Bats

Kenji K. Kojima
Alu Monomer Revisited: Recent Generation of Alu Monomers

Kenji K. Kojima, Vladimir V. Kapitonov and Jerzy Jurka
Recent Expansion of a New Ingi-Related Clade of Vingi non-LTR Retrotransposons in Hedgehogs

Oliver K. Clay and Giorgio Bernardi
GC3 of Genes Can Be Used as a Proxy for Isochore Base Composition: A Reply to Elhaik et al.

Matthias Gralle and Svante Pääbo
A Comprehensive Functional Analysis of Ancestral Human Signal Peptides

Melissa A. Toups, Andrew Kitchen, Jessica E. Light and David L. Reed
Origin of Clothing Lice Indicates Early Clothing Use by Anatomically Modern Humans in Africa

Michał W. Szcześniak, Joanna Ciomborowska, Witold Nowak, Igor B. Rogozin and Izabela Makałowska
Primate and Rodent Specific Intron Gains and the Origin of Retrogenes with Splice Variants

Yan-Bo Sun, Yong-Yi Shen, David M. Irwin and Ya-Ping Zhang
Evaluating the Roles of Energetic Functional Constraints on Teleost Mitochondrial-Encoded Protein Evolution

Shozo Yokoyama, Ahmet Altun and Dale F. DeNardo
Molecular Convergence of Infrared Vision in Snakes

Sankar Subramanian
High Proportions of Deleterious Polymorphisms in Constrained Human Genes

Philippe Deschamps, Enrique Lara, William Marande, Purificación López-García, Flemming Ekelund and David Moreira
Phylogenomic Analysis of Kinetoplastids Supports That Trypanosomatids Arose from within Bodonids

Jessica Siltberg-Liberles
Evolution of Structurally Disordered Proteins Promotes Neostructuralization

Research Articles

Nina Stoletzki and Adam Eyre-Walker
Estimation of the Neutrality Index

Viktor Černý, Connie J. Mulligan, Verónica Fernandes, Nuno M. Silva, Farida Alshamali, Amy Non, Nourdin Harich, Lotfi Cherni, Amel Ben Ammar El Gaaied, Ali Al-Meeri and Luísa Pereira
Internal Diversification of Mitochondrial Haplogroup R0a Reveals Post-Last Glacial Maximum Demographic Expansions in South Arabia

Marcelo M. Brandao and Marcio C. Silva-Filho
Evolutionary History of Arabidopsis thaliana Aminoacyl-tRNA Synthetase Dual-Targeted Proteins

Jonathan Lombard and David Moreira
Origins and Early Evolution of the Mevalonate Pathway of Isoprenoid Biosynthesis in the Three Domains of Life

Delphine Grivet, Federico Sebastiani, Ricardo Alía, Thomas Bataillon, Sara Torre, Mario Zabal-Aguirre, Giovanni G. Vendramin and Santiago C. González-Martínez
Molecular Footprints of Local Adaptation in Two Mediterranean Conifers

Richard J. Harrison and Brian Charlesworth
Biased Gene Conversion Affects Patterns of Codon Usage and Amino Acid Usage in the Saccharomyces sensu stricto Group of Yeasts

Zhenguo Lin and Wen-Hsiung Li
Expansion of Hexose Transporter Genes Was Associated with the Evolution of Aerobic Fermentation in Yeasts

Minh Anh Thi Nguyen, Steffen Klaere and Arndt von Haeseler
MISFITS: Evaluating the Goodness of Fit between a Phylogenetic Model and an Alignment

Sylvain Foret, François Seneca, Danielle de Jong, Annette Bieller, Georg Hemmrich, Rene Augustin, David C. Hayward, Eldon E. Ball, Thomas C.G. Bosch, Kiyokazu Agata, Monika Hassel and David J. Miller
Phylogenomics Reveals an Anomalous Distribution of USP Genes in Metazoans

Nikos Andreakis, Salvatore D’Aniello, Ricard Albalat, Francesco Paolo Patti, Jordi Garcia-Fernandez, Gabriele Procaccini, Paolo Sordino and Anna Palumbo
Evolution of the Nitric Oxide Synthase Family in Metazoans

Yukinori Shimada, Takahito Shikano and Juha Merilä
A High Incidence of Selection on Physiologically Important Genes in the Three-Spined Stickleback, Gasterosteus aculeatus

Laura Baldo, Alan de Queiroz, Marshal Hedin, Cheryl Y. Hayashi and John Gatesy
Nuclear–Mitochondrial Sequences as Witnesses of Past Interbreeding and Population Diversity in the Jumping Bristletail Mesomachilis

James J. Davis and Gary J. Olsen
Characterizing the Native Codon Usages of a Genome: An Axis Projection Approach

Daniel J. G. Lahr, Truc B. Nguyen, Erika Barbero and Laura A. Katz
Evolution of the Actin Gene Family in Testate Lobose Amoebae (Arcellinida) is Characterized by Two Distinct Clades of Paralogs and Recent Independent Expansions

M. Emília Santos, Alekos Athanasiadis, Alexandre B. Leitao, Louis DuPasquier and Élio Sucena
Alternative Splicing and Gene Duplication in the Evolution of the FoxP Gene Subfamily

Mia T. Levine, Melissa L. Eckert and David J. Begun
Whole-Genome Expression Plasticity across Tropical and Temperate Drosophila melanogaster Populations from Eastern Australia

Laura C. Ferguson, Jack Green, Alison Surridge and Chris D. Jiggins
Evolution of the Insect Yellow Gene Family

Matthew D. Rasmussen and Manolis Kellis
A Bayesian Approach for Fast and Accurate Gene Tree Reconstruction

Zheng Zhang, Jie Huang, Zengfang Wang, Lushan Wang and Peiji Gao
Impact of Indels on the Flanking Regions in Structural Domains

Bret A. Payseur, Peicheng Jing and Ryan J. Haasl
A Genomic Portrait of Human Microsatellite Variation

Sha Luo, Junhua Peng, Kunpeng Li, Min Wang and Hanhui Kuang
Contrasting Evolutionary Patterns of the Rp1 Resistance Gene Family in Different Species of Poaceae

Jason W. H. Wong, Simon Y. W. Ho and Philip J. Hogg
Disulfide Bond Acquisition through Eukaryotic Protein Evolution

Sen Xu, Angela R. Omilian and Melania E. Cristescu
High Rate of Large-Scale Hemizygous Deletions in Asexually Propagating Daphnia: Implications for the Evolution of Sex

Jason Evans and Jack Sullivan
Approximating Model Probabilities in Bayesian Information Criterion and Decision-Theoretic Approaches to Model Selection in Phylogenetics

Graham R. Scott, Patricia M. Schulte, Stuart Egginton, Angela L.M. Scott, Jeffrey G. Richards and William K. Milsom
Molecular Evolution of Cytochrome c Oxidase Underlies High-Altitude Adaptation in the Bar-Headed Goose

Haipeng Li
A New Test for Detecting Recent Positive Selection that is Free from the Confounding Impacts of Demography

Kousuke Hanada, Yuji Sawada, Takashi Kuromori, Romy Klausnitzer, Kazuki Saito, Tetsuro Toyoda, Kazuo Shinozaki, Wen-Hsiung Li and Masami Yokota Hirai
Functional Compensation of Primary and Secondary Metabolites by Duplicate Genes in Arabidopsis thaliana

Macarena Toll-Riera, Steve Laurie and M. Mar Alba
Lineage-Specific Variation in Intensity of Natural Selection in Mammals

Lise J. Wallis and Graham P. Wallis
Extreme Positive Selection on a New Highly-Expressed Larval Glycoprotein (LGP) Gene in Galaxias Fishes (Osmeriformes: Galaxiidae)

Eva C.M. Nowack, Heiko Vogel, Marco Groth, Arthur R. Grossman, Michael Melkonian and Gernot Glöckner
Endosymbiotic Gene Transfer and Transcriptional Regulation of Transferred Genes in Paulinella chromatophora

Jeremy L. Marshall, Diana L. Huestis, Christopher Garcia, Yasuaki Hiromasa, Shanda Wheeler, Suegene Noh, John M. Tomich and Daniel J. Howard
Comparative Proteomics Uncovers the Signature of Natural Selection Acting on the Ejaculate Proteomes of Two Cricket Species Isolated by Postmating, Prezygotic Phenotypes

Partho Sarothi Ray, James C. Sullivan, Jie Jia, John Francis, John R. Finnerty and Paul L. Fox
Evolution of Function of a Fused Metazoan tRNA Synthetase

Simon Whelan, Benjamin P. Blackburne and Matthew Spencer
Phylogenetic Substitution Models for Detecting Heterotachy during Plastid Evolution

Pierre Gladieux, Elodie Vercken, Michael C Fontaine, Michael E. Hood, Odile Jonot, Arnaud Couloux and Tatiana Giraud
Maintenance of Fungal Pathogen Species That Are Specialized to Different Hosts: Allopatric Divergence and Introgression through Secondary Contact

Carol K. L. Yeung, Pi-Wen Tsai, R. Terry Chesser, Rong-Chien Lin, Cheng-Te Yao, Xiu-Hua Tian and Shou-Hsien Li
Testing Founder Effect Speciation: Divergence Population Genetics of the Spoonbills Platalea regia and Pl. minor (Threskiornithidae, Aves)

Aziz Mithani, Jotun Hein, and Gail M. Preston
Comparative Analysis of Metabolic Networks Provides Insight into the Evolution of Plant Pathogenic and Nonpathogenic Lifestyles in Pseudomonas

Wenwu Wu, Xiaotai Huang, Jian Cheng, Zhenggang Li, Stefan de Folter, Zhuoran Huang, Xiaoqian Jiang, Hongxia Pang and Shiheng Tao
Conservation and Evolution in and among SRF- and MEF2-Type MADS Domains and Their Binding Sites

Qing-Peng Kong, Chang Sun, Hua-Wei Wang, Mian Zhao, Wen-Zhi Wang, Li Zhong, Xiao-Dan Hao, Hui Pan, Sha-Yan Wang, Yao-Ting Cheng, Chun-Ling Zhu, Shi-Fang Wu, Li-Na Liu, Jie-Qiong Jin, Yong-Gang Yao and Ya-Ping Zhang
Large-Scale mtDNA Screening Reveals a Surprising Matrilineal Complexity in East Asia and Its Implications to the Peopling of the Region

Yu Fan, Rui Wu, Ming-Hui Chen, Lynn Kuo and Paul O. Lewis
Choosing among Partition Models in Bayesian Phylogenetics

Daryn A. Stover and Brian C. Verrelli
Comparative Vertebrate Evolutionary Analyses of Type I Collagen: Potential of COL1a1 Gene Structure and Intron Variation for Common Bone-Related Diseases

Jun Gojobori and Shintaroh Ueda
Elevated Evolutionary Rate in Genes with Homopolymeric Amino Acid Repeats Constituting Nondisordered Structure

Micha Volokita, Tamar Rosilio-Brami, Natalia Rivkin and Moriyah Zik
Combining Comparative Sequence and Genomic Data to Ascertain Phylogenetic Relationships and Explore the Evolution of the Large GDSL-Lipase Family in Land Plants

Minglei Wang, Ying-Ying Jiang, Kyung Mo Kim, Ge Qu, Hong-Fang Ji, Jay E. Mittenthal, Hong-Yu Zhang and Gustavo Caetano-Anollés
A Universal Molecular Clock of Protein Folds and Its Power in Tracing the Early History of Aerobic Metabolism and Planet Oxygenation

Mary M. Guisinger, Jennifer V. Kuehl, Jeffrey L. Boore, and Robert K. Jansen
Extreme Reconfiguration of Plastid Genomes in the Angiosperm Family Geraniaceae: Rearrangements, Repeats, and Codon Usage

Angela M. Hancock, Vanessa J. Clark, Yudong Qian and Anna Di Rienzo
Population Genetic Analysis of the Uncoupling Proteins Supports a Role for UCP3 in Human Cold Resistance

Adam Bjork, Weimin Liu, Joel O. Wertheim, Beatrice H. Hahn and Michael Worobey
Evolutionary History of Chimpanzees Inferred from Complete Mitochondrial Genomes

Stephen H. Montgomery, Isabella Capellini, Chris Venditti, Robert A. Barton and Nicholas I. Mundy
Adaptive Evolution of Four Microcephaly Genes and the Evolution of Brain Size in Anthropoid Primates

Hisakazu Iwama, Koji Murao, Hitomi Imachi and Toshihiko Ishida
MicroRNA Networks Alter to Conform to Transcription Factor Networks Adding Redundancy and Reducing the Repertoire of Target Genes for Coordinated Regulation

Paco Hulpiau and Frans van Roy
New Insights into the Evolution of Metazoan Cadherins

Guoqin Yu, Kenneth M. Olsen and Barbara A. Schaal
Molecular Evolution of the Endosperm Starch Synthesis Pathway Genes in Rice (Oryza sativa L.) and Its Wild Ancestor, O. rufipogon L.

Jukka Sirén, Pekka Marttinen and Jukka Corander
Reconstructing Population Histories from Single Nucleotide Polymorphism Data

Sébastien Leclercq, Isabelle Giraud and Richard Cordaux
Remarkable Abundance and Evolution of Mobile Group II Introns in Wolbachia Bacterial Endosymbionts

Heike Wägele, Oliver Deusch, Katharina Händeler, Rainer Martin, Valerie Schmitt, Gregor Christa, Britta Pinzger, Sven B. Gould, Tal Dagan, Annette Klussmann-Kolb and William Martin
Transcriptomic Evidence That Longevity of Acquired Plastids in the Photosynthetic Slugs Elysia timida and Plakobranchus ocellatus Does Not Entail Lateral Transfer of Algal Nuclear Genes

Sophie Octavia, Ram P. Maharjan, Vitali Sintchenko, Gordon Stevenson, Peter R. Reeves, Gwendolyn L. Gilbert and Ruiting Lan
Insight into Evolution of Bordetella pertussis from Comparative Genomic Analysis: Evidence of Vaccine-Driven Selection

Hua Zhong, Hong Shi, Xue-Bin Qi, Zi-Yuan Duan, Ping-Ping Tan, Li Jin, Bing Su and Runlin Z. Ma
Extended Y Chromosome Investigation Suggests Postglacial Migrations of Modern Humans into East Asia via the Northern Route

Nicolas Lartillot and Raphaël Poujol
A Phylogenetic Model for Investigating Correlated Evolution of Substitution Rates and Continuous Phenotypic Characters

Diego Ayala, Michael C. Fontaine, Anna Cohuet, Didier Fontenille, Renaud Vitalis and Frédéric Simard
Chromosomal Inversions, Natural Selection and Adaptation in the Malaria Vector Anopheles funestus

Itay Mayrose and Sarah P. Otto
A Likelihood Method for Detecting Trait-Dependent Shifts in the Rate of Molecular Evolution

Suo Qiu, Roberta Bergero, Kai Zeng and Deborah Charlesworth
Patterns of Codon Usage Bias in Silene latifolia

Anastasios D. Tsaousis, Daniel Gaston, Alexandra Stechmann, Peter B. Walker, Trevor Lithgow and Andrew J. Roger
A Functional Tom70 in the Human Parasite Blastocystis sp.: Implications for the Evolution of the Mitochondrial Import Apparatus

Jill S. Miller, Ambika Kamath, Julian Damashek and Rachel A. Levin
Out of America to Africa or Asia: Inference of Dispersal Histories Using Nuclear and Plastid DNA and the S-RNase Self-incompatibility Locus

Péter Szövényi, Stefan A. Rensing, Daniel Lang, Gregory A. Wray and A. Jonathan Shaw
Generation-Biased Gene Expression in a Bryophyte Model System

Ludovica Montanucci, Hafid Laayouni, Giovanni Marco Dall'Olio and Jaume Bertranpetit
Molecular Evolution and Network-Level Analysis of the N-Glycosylation Metabolic Pathway Across Primates

Jeffrey R. Powell, Kirstin Dion, Montserrat Papaceit, Montserrat Aguadé, Saverio Vicario and Ryan C. Garrick
Nonrecombining Genes in a Recombination Environment: The Drosophila “Dot” Chromosome

Robert K. Jansen, Christopher Saski, Seung-Bum Lee, Anne K. Hansen and Henry Daniell
Complete Plastid Genome Sequences of Three Rosids (Castanea, Prunus, Theobroma): Evidence for At Least Two Independent Transfers of rpl22 to the Nucleus

Jun Ohashi, Izumi Naka and Naoyuki Tsuchiya
The Impact of Natural Selection on an ABCC11 SNP Determining Earwax Type

Jenny Widmark, Görel Sundström, Daniel Ocampo Daza and Dan Larhammar
Differential Evolution of Voltage-Gated Sodium Channels in Tetrapods and Teleost Fishes



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PLANT - FAMILY - FLOWER - GENERA - JOURNAL - ARTICOLO - PLANTS - PIANTE - BOTANIQUE - ROŚLINY - SINONIM - FAMIGLIA - BOTANY - NAUKA - SINONIMO - BOTANICA - WYCIECZKA - TRAVEL - SINÓNIMO - DOCTOR - FRUIT - ARTICOLO - SYNONIEM - CZASOPISMO - SYNONYM - DOKTOR - SYNONYME - SYSTEMATIC - SYSTEMATYKA - SZINONIMA - PROFESOR - RODZINA - ARTYKUŁ - ARTICLE - FLOWER - KWIATY - OWOC - SEEDS - NASIONA - CULTIVATION - USE - WATERING - PROPAGATION - PESTSM - DISEASES - FERTILIZATION - HOUSE - GARDEN - BOWL - KWITNIENIE - FLOWERBED - SOIL - POND - MARSH - SPECIES - HYBRIDS - VEGETABLE GARDEN - UPRAWA - ZASTOSOWANIE - PODLEWANIE - ROZMNAŻANIE - SZKODNIKI - CHOROBY - NAWOŻENIE - ROŚLINY DOMOWE - ROŚLINY BALKONOWE - ROŚLINY TARASOWE - OGRÓD - POJEMNIK - SUBSTRAT - PODŁOŻE - KERAMZYT - GLINA - TORF - DONICA - DONICZKA - ZIEMIA - RABATA - GLEBA - ROŚLINY WODNE - STAW - WODA - ROŚLINY BAGIENNE - OWOCE - WARZYWA - SPRZEDAŻ ROŚLIN - GATUNKI - MIESZAŃCE - CV - KULTYWARY

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POLITYKA I NIE TYLKO , PRZEPISY KULINARNE , ULUBIONE KSIĄŻKI , DOWCIPY , GEOGRAFIA , ŚWIEBODZICE , FORUM O RODZAJU HOYA , PEUGEOT , TWOJE CENTRUM FINANSOWE , PiS , PLATFORMA OBYWATELSKA

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