Contents:
Letters
Armando Geraldes, Teri Rambo, Rod A. Wing, Nuno Ferrand and Michael W. Nachman
Extensive Gene Conversion Drives the Concerted Evolution of Paralogous Copies of the SRY Gene in European Rabbits
Shira Omer, Amir Kovacs, Yuval Mazor and Uri Gophna
Integration of a Foreign Gene into a Native Complex Does Not Impair Fitness in an Experimental Model of Lateral Gene Transfer
Chungoo Park, Laura Carrel and Kateryna D. Makova
Strong Purifying Selection at Genes Escaping X Chromosome Inactivation
Research Articles
Karen Meusemann, Björn M. von Reumont, Sabrina Simon, Falko Roeding, Sascha Strauss, Patrick Kück, Ingo Ebersberger, Manfred Walzl, Günther Pass, Sebastian Breuers, Viktor Achter, Arndt von Haeseler, Thorsten Burmester, Heike Hadrys, J. Wolfgang Wägele and Bernhard Misof
A Phylogenomic Approach to Resolve the Arthropod Tree of Life
Ovidiu Paun, Richard M. Bateman, Michael F. Fay, Mikael Hedrén, Laure Civeyrel and Mark W. Chase
Stable Epigenetic Effects Impact Adaptation in Allopolyploid Orchids (Dactylorhiza: Orchidaceae)
Henk C. den Bakker, Nicholas W. VanKuren, Joseph B. Morton and Teresa E. Pawlowska
Clonality and Recombination in the Life History of an Asexual Arbuscular Mycorrhizal Fungus
Abhijit Sanyal, Jetty S.S. Ammiraju, Fei Lu, Yeisoo Yu, Teri Rambo, Jennifer Currie, Kristi Kollura, Hye-Ran Kim, Jinfeng Chen, Jianxin Ma, Phillip San Miguel, Chen Mingsheng, Rod A. Wing and Scott A. Jackson
Orthologous Comparisons of the Hd1 Region across Genera Reveal Hd1 Gene Lability within Diploid Oryza Species and Disruptions to Microsynteny in Sorghum
Harald O. Letsch, Patrick Kück, Roman R. Stocsits and Bernhard Misof
The Impact of rRNA Secondary Structure Consideration in Alignment and Tree Reconstruction: Simulated Data and a Case Study on the Phylogeny of Hexapods
Kazuhiko Ohshima and Kumiko Igarashi
Inference for the Initial Stage of Domain Shuffling: Tracing the Evolutionary Fate of the PIPSL Retrogene in Hominoids
Anders Albrechtsen, Finn Cilius Nielsen and Rasmus Nielsen
Ascertainment Biases in SNP Chips Affect Measures of Population Divergence
Sean Chun-Chang Chen, Feng-Chi Chen and Wen-Hsiung Li
Phosphorylated and Nonphosphorylated Serine and Threonine Residues Evolve at Different Rates in Mammals
Matteo Fumagalli, Rachele Cagliani, Stefania Riva, Uberto Pozzoli, Mara Biasin, Luca Piacentini, Giacomo P. Comi, Nereo Bresolin, Mario Clerici and Manuela Sironi
Population Genetics of IFIH1: Ancient Population Structure, Local Selection, and Implications for Susceptibility to Type 1 Diabetes
Simon C. Lovell and David L. Robertson
An Integrated View of Molecular Coevolution in Protein–Protein Interactions
Jun G. Inoue, Masaki Miya, Kevin Lam, Boon-Hui Tay, Janine A. Danks, Justin Bell, Terrence I. Walker and Byrappa Venkatesh
Evolutionary Origin and Phylogeny of the Modern Holocephalans (Chondrichthyes: Chimaeriformes): A Mitogenomic Perspective
Francesca Tria, Emanuele Caglioti, Vittorio Loreto and Andrea Pagnani
A Stochastic Local Search Algorithm for Distance-Based Phylogeny Reconstruction
Erin M. Hill-Burns and Andrew G. Clark
Functional Regulatory Divergence of the Innate Immune System in Interspecific Drosophila Hybrids
Katja Nowick, Aaron T. Hamilton, Huimin Zhang and Lisa Stubbs
Rapid Sequence and Expression Divergence Suggest Selection for Novel Function in Primate-Specific KRAB-ZNF Genes
Romain A. Studer and Marc Robinson-Rechavi
Large-Scale Analysis of Orthologs and Paralogs under Covarion-Like and Constant-but-Different Models of Amino Acid Evolution
Pengda Liu, John M. Kenney, John W. Stiller and Arno L. Greenleaf
Genetic Organization, Length Conservation, and Evolution of RNA Polymerase II Carboxyl-Terminal Domain
Huabin Zhao, Yingying Zhou, C. Miguel Pinto, Pierre Charles-Dominique, Jorge Galindo-González, Shuyi Zhang and Jianzhi Zhang
Evolution of the Sweet Taste Receptor Gene Tas1r2 in Bats
Barry Causier, Rosa Castillo, Yongbiao Xue, Zsuzsanna Schwarz-Sommer and Brendan Davies
Tracing the Evolution of the Floral Homeotic B- and C-Function Genes through Genome Synteny
Erratum (1)
Erratum (2)
Erratum (3)
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