Molecular Biology and Evolution

Spis treści Molecular Biology and Evolution, Volume 27, Number 1:

Carmela Gissi, Graziano Pesole, Francesco Mastrototaro, Fabio Iannelli, Vanessa Guida, Francesca Griggio
Hypervariability of Ascidian Mitochondrial Gene Order: Exposing the Myth of Deuterostome Organelle Genome Stability

Peter W. Osborne, David E.K. Ferrier
Chordate Hox and ParaHox Gene Clusters Differ Dramatically in Their Repetitive Element Content

Manolo Gouy, Stéphane Guindon, Olivier Gascuel
SeaView Version 4: A Multiplatform Graphical User Interface for Sequence Alignment and Phylogenetic Tree Building

Steven F. Field, Mikhail V. Matz
Retracing Evolution of Red Fluorescence in GFP-Like Proteins from Faviina Corals

Thomas J. Templeton, Shinichiro Enomoto, Wei-June Chen, Chin-Gi Huang, Cheryl A. Lancto, Mitchell S. Abrahamsen, Guan Zhu
A Genome-Sequence Survey for Ascogregarina taiwanensis Supports Evolutionary Affiliation but Metabolic Diversity between a Gregarine and Cryptosporidium

A. P. Jason de Koning, Wanjun Gu, David D. Pollock
Rapid Likelihood Analysis on Large Phylogenies Using Partial Sampling of Substitution Histories

Christopher W. Wheat, Christoph R. Haag, James H. Marden, Ilkka Hanski, Mikko J. Frilander
Nucleotide Polymorphism at a Gene (Pgi) under Balancing Selection in a Butterfly Metapopulation

Barry A. Kesner, Sharon L. Milgram, Brenda R.S. Temple, Nikolay V. Dokholyan
Isoform Divergence of the Filamin Family of Proteins

Jared L. Strasburg, Loren H. Rieseberg
How Robust Are "Isolation with Migration" Analyses to Violations of the IM Model? A Simulation Study

Laura A. Hug, Alexandra Stechmann, Andrew J. Roger
Phylogenetic Distributions and Histories of Proteins Involved in Anaerobic Pyruvate Metabolism in Eukaryotes

Domenec Farré, M. Mar Alba
Heterogeneous Patterns of Gene-Expression Diversification in Mammalian Gene Duplicates

N. Ray, D. Wegmann, N.J.R. Fagundes, S. Wang, A. Ruiz-Linares, L. Excoffier
A Statistical Evaluation of Models for the Initial Settlement of the American Continent Emphasizes the Importance of Gene Flow with Asia

Ramiro Logares, Jon Brate, Friederike Heinrich, Kamran Shalchian-Tabrizi, Stefan Bertilsson
Infrequent Transitions between Saline and Fresh Waters in One of the Most Abundant Microbial Lineages (SAR11)

Nelson Avonce, Jan Wuyts, Katrien Verschooten, Lies Vandesteene, Patrick Van Dijck
The Cytophaga hutchinsonii ChTPSP: First Characterized Bifunctional TPS–TPP Protein as Putative Ancestor of All Eukaryotic Trehalose Biosynthesis Proteins

Yan Zhou, Henner Brinkmann, Nicolas Rodrigue, Nicolas Lartillot, Hervé Philippe
A Dirichlet Process Covarion Mixture Model and Its Assessments Using Posterior Predictive Discrepancy Tests

Wentao Shi, Qasim Ayub, Mark Vermeulen, Rong-guang Shao, Sofia Zuniga, Kristiaan van der Gaag, Peter de Knijff, Manfred Kayser, Yali Xue, Chris Tyler-Smith
A Worldwide Survey of Human Male Demographic History Based on Y-SNP and Y-STR Data from the HGDP–CEPH Populations

Bryan G. Fry, Kim Roelants, Kelly Winter, Wayne C. Hodgson, Laura Griesman, Hang Fai Kwok, Denis Scanlon, John Karas, Chris Shaw, Lily Wong, Janette A. Norman
Novel Venom Proteins Produced by Differential Domain-Expression Strategies in Beaded Lizards and Gila Monsters (genus Heloderma)

Jesse D. Hollister, Jeffrey Ross-Ibarra, Brandon S. Gaut
Indel-Associated Mutation Rate Varies with Mating System in Flowering Plants

Marcos Pérez-Losada, David V. Jobes, Faruk Sinangil, Keith A. Crandall, David Posada, Phillip W. Berman
Phylodynamics of HIV-1 from a Phase-III AIDS Vaccine Trial in North America

Caitlin Pepperell, Vernon H. Hoeppner, Mikhail Lipatov, Wendy Wobeser, Gary K. Schoolnik, Marcus W. Feldman
Bacterial Genetic Signatures of Human Social Phenomena among M. tuberculosis from an Aboriginal Canadian Population

Frida Belinky, Ofir Cohen, Dorothée Huchon
Large-Scale Parsimony Analysis of Metazoan Indels in Protein-Coding Genes

Tomohide Hiwatashi, Yugo Okabe, Toko Tsutsui, Chihiro Hiramatsu, Amanda D. Melin, Hiroki Oota, Colleen M. Schaffner, Filippo Aureli, Linda M. Fedigan, Hideki Innan, Shoji Kawamura
An Explicit Signature of Balancing Selection for Color-Vision Variation in New World Monkeys

Courtney C. Babbitt, Jesse S. Silverman, Ralph Haygood, Jennifer M. Reininga, Matthew V. Rockman, Gregory A. Wray
Multiple Functional Variants in cis Modulate PDYN Expression

Marian Bemer, Jonathan Gordon, Koen Weterings, Gerco C. Angenent
Divergence of Recently Duplicated M{gamma}-Type MADS-Box Genes in Petunia


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